View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_337 (Length: 230)
Name: NF8912A_low_337
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_337 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 8190596 - 8190813
Alignment:
| Q |
1 |
gcgtaatttacagggtggttacgactacttcctgggcagctgcaaatcgctatgcagcacgtgtttgtgctcaagagcagcgaacgaagaaaattttgaa |
100 |
Q |
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| T |
8190596 |
gcgtaatttaaagggtggttaccactactacctggccagctgcaaatcgctatgcagcacgtgtttgtgctcaagagcagcgaacgaagaaaattttgaa |
8190695 |
T |
|
| Q |
101 |
ttttggagaagtttgccctgaccttgttacacattatgagaagttaaacaaagtcaggtcccaaaaaactgttatctttcctggtggttttaatgagagc |
200 |
Q |
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| T |
8190696 |
ttttggagaagtttgccctgaccttgttacacattatgagaagttaaacaaagtcaggtcccaaaaaactgttatctttcctggtggttttaatgagagc |
8190795 |
T |
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| Q |
201 |
taatttcacatggttctt |
218 |
Q |
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|||||||||||||||||| |
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| T |
8190796 |
taatttcacatggttctt |
8190813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 32552819 - 32553022
Alignment:
| Q |
15 |
gtggttacgactacttcctgggcagctgcaaatcgctatgcagcacgtgtttgtgctcaagagcagcgaacgaagaaaattttgaattttggagaagttt |
114 |
Q |
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|||||| | |||||| |||| ||||||||||||||||||||||||||||||| ||||||||||| | || |||||||||||||||||||||| ||| |
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| T |
32552819 |
gtggttgccactactaactggccagctgcaaatcgctatgcagcacgtgtttgcgctcaagagcattgtacagagaaaattttgaattttggagagattt |
32552918 |
T |
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| Q |
115 |
gccctgaccttgttacacattatgagaagttaaacaaagtcaggtcccaaaaaactgttatctttcctggtggttttaatgagagctaatttcacatggt |
214 |
Q |
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||| ||||||||||| ||||||||||||||| |||||||||||| ||||||||| ||||||||||| || |||| ||| ||||||| ||||||||||||| |
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| T |
32552919 |
gccttgaccttgttagacattatgagaagttgaacaaagtcaggccccaaaaaattgttatctttcgtgatggtgttagtgagagccaatttcacatggt |
32553018 |
T |
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| Q |
215 |
tctt |
218 |
Q |
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|||| |
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| T |
32553019 |
tctt |
32553022 |
T |
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