View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912A_low_338 (Length: 230)

Name: NF8912A_low_338
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8912A_low_338
NF8912A_low_338
[»] chr1 (3 HSPs)
chr1 (134-230)||(27109777-27109873)
chr1 (134-190)||(32946971-32947027)
chr1 (1-59)||(32946838-32946896)
[»] chr7 (11 HSPs)
chr7 (134-230)||(5892980-5893076)
chr7 (144-224)||(40074342-40074422)
chr7 (134-230)||(26199711-26199807)
chr7 (134-230)||(36934170-36934266)
chr7 (1-59)||(5892849-5892905)
chr7 (9-59)||(26199882-26199932)
chr7 (1-59)||(36934330-36934388)
chr7 (134-230)||(15121540-15121634)
chr7 (138-230)||(47588961-47589053)
chr7 (1-59)||(15121407-15121465)
chr7 (1-59)||(47589132-47589190)
[»] chr4 (15 HSPs)
chr4 (134-230)||(12888172-12888268)
chr4 (134-230)||(14792163-14792259)
chr4 (140-224)||(3915250-3915334)
chr4 (141-230)||(23533284-23533373)
chr4 (134-230)||(51407365-51407459)
chr4 (134-224)||(18357028-18357118)
chr4 (134-224)||(18431689-18431779)
chr4 (136-200)||(3926261-3926325)
chr4 (1-59)||(12888343-12888401)
chr4 (141-226)||(50589512-50589597)
chr4 (182-230)||(8817560-8817608)
chr4 (1-49)||(51407232-51407280)
chr4 (1-59)||(14792334-14792392)
chr4 (1-59)||(18357193-18357250)
chr4 (1-59)||(18431557-18431614)
[»] scaffold0005 (2 HSPs)
scaffold0005 (134-230)||(47472-47568)
scaffold0005 (1-59)||(47339-47397)
[»] chr6 (5 HSPs)
chr6 (134-230)||(22696473-22696569)
chr6 (134-222)||(34503047-34503135)
chr6 (1-59)||(22696644-22696702)
chr6 (161-230)||(24045610-24045679)
chr6 (1-58)||(34502914-34502971)
[»] chr5 (8 HSPs)
chr5 (134-230)||(33758097-33758191)
chr5 (134-221)||(9436355-9436442)
chr5 (144-230)||(36607939-36608026)
chr5 (134-230)||(27632254-27632350)
chr5 (1-57)||(33758268-33758324)
chr5 (5-57)||(27632125-27632177)
chr5 (1-59)||(9436517-9436575)
chr5 (1-55)||(36607797-36607851)
[»] chr3 (7 HSPs)
chr3 (134-230)||(25498767-25498863)
chr3 (136-221)||(38258762-38258847)
chr3 (134-213)||(51056863-51056942)
chr3 (142-224)||(49358512-49358594)
chr3 (3-59)||(51056733-51056789)
chr3 (178-214)||(17113765-17113801)
chr3 (1-59)||(25498939-25498997)
[»] chr8 (6 HSPs)
chr8 (134-200)||(20518974-20519040)
chr8 (145-230)||(38149566-38149651)
chr8 (1-59)||(38149422-38149480)
chr8 (1-59)||(20519115-20519173)
chr8 (161-230)||(32919573-32919642)
chr8 (16-59)||(32919437-32919480)
[»] chr2 (5 HSPs)
chr2 (134-230)||(36592831-36592927)
chr2 (134-224)||(5051321-5051411)
chr2 (144-230)||(1242665-1242751)
chr2 (11-59)||(5051486-5051534)
chr2 (1-59)||(36593002-36593060)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 27109873 - 27109777
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  27109873 cttcaacggtttggttcgatcagaacattctcatccggttcgactactctgttatctggtggtttgtcgatgtggatcgatggtgttgctgctgtga 27109777  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 32946971 - 32947027
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatct 190  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||    
T  32946971 cttcaacggttgggttcgatcagaaccttctcatccggttcgactactctattatct 32947027  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 32946838 - 32946896
Alignment:
Q  1 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatctat 59  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||| || ||||||    
T  32946838 aaaacacaggttgtctggtgtttttgtgtggtggttgtttccttctgatccaaatctat 32946896  T

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Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 5892980 - 5893076
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||    
T  5892980 cttcaacggttgggttcaatcagaaccttctcatccggttcgattactctgttatctggtggtttgtcgatgtggattgatggtgttgttgttgtga 5893076  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 40074342 - 40074422
Alignment:
Q  144 tgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctg 224  Q
    |||||||||||||||| |||||||||||||||| |||| |||||||||||||||| |||| ||||||||||||||||||||    
T  40074342 tgggttcgatcagaaccttctcatccggttcgactactatgttatctggtggtttgtcgaggtggatcgatggtgttgctg 40074422  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 26199807 - 26199711
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    |||||| |||||||||||||||| || |||||||| ||||||| |||||| |||| ||||||||| |||||||| ||||||||||||| ||||||||    
T  26199807 cttcaatggttgggttcgatcagtaccttctcatcaggttcgactactctattatttggtggtttgtcgatgtgtatcgatggtgttgttgttgtga 26199711  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 36934266 - 36934170
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    |||||||||||||||||||||||||| |||||||| ||||||| |||||| ||||||||||||||  |  ||||||| |||| |||||||| |||||    
T  36934266 cttcaacggttgggttcgatcagaaccttctcatctggttcgactactctattatctggtggtttgccagtgtggattgatgatgttgctgctgtga 36934170  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 5892849 - 5892905
Alignment:
Q  1 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatctat 59  Q
    |||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||    
T  5892849 aaaacacaggttgtctggtgtttttgtgtggtggt--tttccttccgattcagatctat 5892905  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 26199932 - 26199882
Alignment:
Q  9 ggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatctat 59  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  26199932 ggttgtctggtgtttttgtgtggtggttgtttccttccgatccagatctat 26199882  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 36934388 - 36934330
Alignment:
Q  1 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatctat 59  Q
    ||||||||| |||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  36934388 aaaacacagtttgtctggtgtttttgtgtggtggatgtttccttccgattaagatctat 36934330  T

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Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 15121540 - 15121634
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    ||||||||||||| |||||||||||| |||||||| ||||||| ||||||||||| || |||| | ||  ||||| ||||||||||||||| |||||    
T  15121540 cttcaacggttgg-ttcgatcagaaccttctcatctggttcgactactctgttatttgttggtatgtcagtgtgg-tcgatggtgttgctgctgtga 15121634  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 230
Target Start/End: Complemental strand, 47589053 - 47588961
Alignment:
Q  138 aacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    |||||||| ||||||||||||  ||||||||||||| || |||| ||||||||| || ||| |||||||| | || ||||||||||| |||||    
T  47589053 aacggttgagttcgatcagaatcttctcatccggtttgactactgtgttatctgatgatttgtcgatgtgaaacgttggtgttgctgctgtga 47588961  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 15121407 - 15121465
Alignment:
Q  1 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatctat 59  Q
    |||||| ||||||||||||| ||||||| ||||| |||||||||||||| |||||||||    
T  15121407 aaaacataggttgtctggtgcttttgtgtggtggatgtttccttccgatccagatctat 15121465  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 47589190 - 47589132
Alignment:
Q  1 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatctat 59  Q
    |||||||||||||| ||||||||||||| |||||  ||||||||| ||| ||| |||||    
T  47589190 aaaacacaggttgtttggtgtttttgtgtggtggacgtttccttctgatccaggtctat 47589132  T

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Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 12888268 - 12888172
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    |||||||||||||||||||||||| | |||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12888268 cttcaacggttgggttcgatcagatccttctcatccgattcgactactctgttatctggtggtttgtcgatgtggatcgatggtgttgctgttgtga 12888172  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 14792259 - 14792163
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    |||||||||||||||||||||| |||  ||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||| |||||    
T  14792259 cttcaacggttgggttcgatcataactatctcatccggttcgactactctgttatctggtgggttgtcgatgtggatcgatggtgttgctgctgtga 14792163  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 3915334 - 3915250
Alignment:
Q  140 cggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctg 224  Q
    |||||||||||||| ||||| |||||||| ||||||| || ||||||||||||||||||||||| ||||||||||||||||||||    
T  3915334 cggttgggttcgattagaaccttctcatctggttcgactattctgttatctggtggtttatcgacgtggatcgatggtgttgctg 3915250  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 23533373 - 23533284
Alignment:
Q  141 ggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    |||||| |||||||| ||| |||||| ||||||| | ||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  23533373 ggttggattcgatcataaccttctcacccggttcaagtactctgttatctggtggtttgtcgatgtggattgatggtgttgctgttgtga 23533284  T

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Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 51407365 - 51407459
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    |||||||||||||||||||||||||| ||||||||| ||| || ||||  |||||||| |||||| |||| ||||||||||||||||||||||||||    
T  51407365 cttcaacggttgggttcgatcagaaccttctcatccagttggactact--gttatctgatggtttgtcgaagtggatcgatggtgttgctgttgtga 51407459  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 18357118 - 18357028
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctg 224  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||||||||||| | ||| ||| |||||||||||||||| ||| ||||    
T  18357118 cttcaacggttgggttcgatcagaatcttctcatccggttcgactactctgttatatagtgttttgtcgatgtggatcgatgatgtggctg 18357028  T

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Target: chr4; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 18431689 - 18431779
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctg 224  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||||||||||| | ||| ||| |||||||||||||||| ||| ||||    
T  18431689 cttcaacggttgggttcgatcagaatcttctcatccggttcgactactctgttatatagtgttttgtcgatgtggatcgatgatgtggctg 18431779  T

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Target: chr4; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 3926325 - 3926261
Alignment:
Q  136 tcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttat 200  Q
    |||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  3926325 tcaatggttgggttcgatcagaaccttctcatccggttcgactactctgttatctggtggtttat 3926261  T

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Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 12888401 - 12888343
Alignment:
Q  1 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatctat 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  12888401 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttctgatccagatctat 12888343  T

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Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 50589597 - 50589512
Alignment:
Q  141 ggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgtt 226  Q
    ||||||||||||||| ||| ||| || ||||||||| | |||||||||||||| |||| ||||||||||| |||||||||| ||||    
T  50589597 ggttgggttcgatcaaaaccttcccacccggttcgactgctctgttatctggtagtttgtcgatgtggattgatggtgttgttgtt 50589512  T

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Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 8817608 - 8817560
Alignment:
Q  182 ctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  8817608 ctgttatctagtggtttgtcgatgtggatcgatggtgttgctgttgtga 8817560  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 51407232 - 51407280
Alignment:
Q  1 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttccgat 49  Q
    |||||||||||||||||||||||| ||| ||||| ||||||||||||||    
T  51407232 aaaacacaggttgtctggtgttttagtgtggtggatgtttccttccgat 51407280  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 14792392 - 14792334
Alignment:
Q  1 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatctat 59  Q
    ||||||||||||| ||||||  || ||| |||||||||||||||| ||| |||||||||    
T  14792392 aaaacacaggttgcctggtgaattcgtgtggtggttgtttccttctgatccagatctat 14792334  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 18357250 - 18357193
Alignment:
Q  1 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatctat 59  Q
    |||| ||||||||||||||||||||||| | ||||| |||||||||||| || ||||||    
T  18357250 aaaatacaggttgtctggtgtttttgtgtgatggtt-tttccttccgatccaaatctat 18357193  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 18431557 - 18431614
Alignment:
Q  1 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatctat 59  Q
    |||| ||||||||||||||||||||||| | ||||| |||||||||||| || ||||||    
T  18431557 aaaatacaggttgtctggtgtttttgtgtgatggtt-tttccttccgatccaaatctat 18431614  T

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Target: scaffold0005 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 47472 - 47568
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    |||||||||||||||||||||| |||  ||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||| |||||    
T  47472 cttcaacggttgggttcgatcataactatctcatccggttcgactactctgttatctggtgggttgtcgatgtggatcgatggtgttgctgctgtga 47568  T

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Target: scaffold0005; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 47339 - 47397
Alignment:
Q  1 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatctat 59  Q
    ||||||||||||| ||||||  || ||| |||||||||||||||| ||| |||||||||    
T  47339 aaaacacaggttgcctggtgaattcgtgtggtggttgtttccttctgatccagatctat 47397  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 22696569 - 22696473
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    |||||||||||||||||||||| ||| || ||||||||||||| |||||| |||||||||||||| ||||| ||||||||||||||||||| |||||    
T  22696569 cttcaacggttgggttcgatcataaccttttcatccggttcgactactctattatctggtggtttgtcgatatggatcgatggtgttgctgctgtga 22696473  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 34503047 - 34503135
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgc 222  Q
    ||||||||||||| |||||| ||||| |||| | || |||||| |||||||||||||||||||||   |||||||||||||||||||||    
T  34503047 cttcaacggttggtttcgataagaaccttctaagcctgttcgactactctgttatctggtggtttgctgatgtggatcgatggtgttgc 34503135  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 22696702 - 22696644
Alignment:
Q  1 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatctat 59  Q
    |||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||||    
T  22696702 aaaacacaggttatctggtgtttatgtgtggtggttgtttccttccgatccagatctat 22696644  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 24045610 - 24045679
Alignment:
Q  161 ttctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    |||||||||||||||| ||||||||||||||||||||| ||  | |||||||||| | ||||||||||||    
T  24045610 ttctcatccggttcgactactctgttatctggtggtttgtccgtatggatcgatgatattgctgttgtga 24045679  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 34502914 - 34502971
Alignment:
Q  1 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatcta 58  Q
    ||||||||||||||||| |||||||||| ||| ||||||||||||| || ||||||||    
T  34502914 aaaacacaggttgtctgttgtttttgtgtggtcgttgtttccttccaatccagatcta 34502971  T

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Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 33758191 - 33758097
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    |||||||||||||||||||||||||| ||||||||| |||||| ||||  |||||||| |||||| ||||||||||||||||||||||| |||||||    
T  33758191 cttcaacggttgggttcgatcagaaccttctcatccagttcgactact--gttatctgatggtttgtcgatgtggatcgatggtgttgccgttgtga 33758097  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 9436442 - 9436355
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttg 221  Q
    ||||||||| || |||| |||| ||| |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  9436442 cttcaacggctgagttcaatcaaaaccttctcatctggttcgattactctgttatctagtggtttgtcgatgtggatcgatggtgttg 9436355  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 36607939 - 36608026
Alignment:
Q  144 tgggttcgatcagaacattctcatccggttcgattactctgttat-ctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    |||||||||||||||| || |||||| |||||| |||||| || | | |||||||| |||||||||||||||||||||| ||||||||    
T  36607939 tgggttcgatcagaaccttttcatccagttcgactactctatttttccggtggtttgtcgatgtggatcgatggtgttgttgttgtga 36608026  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 27632254 - 27632350
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    ||||||||| |||||| ||| ||||  |||| ||| |||| || |||| |||||| |||||||||  ||||||||||||||||| ||||||||||||    
T  27632254 cttcaacgggtgggtttgattagaatcttctaatctggtttgactactatgttatatggtggtttgccgatgtggatcgatggtattgctgttgtga 27632350  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 33758324 - 33758268
Alignment:
Q  1 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatct 57  Q
    |||||||||||||||||||||||| ||| ||||| |||||||||||||| |||||||    
T  33758324 aaaacacaggttgtctggtgttttagtgtggtggatgtttccttccgatccagatct 33758268  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 27632125 - 27632177
Alignment:
Q  5 cacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatct 57  Q
    |||| ||||| ||||||||||||| |||||||||||||||||||| |||||||    
T  27632125 cacaagttgtttggtgtttttgtgtggtggttgtttccttccgatccagatct 27632177  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 9436575 - 9436517
Alignment:
Q  1 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatctat 59  Q
    |||||||| ||| ||| ||||||||||| ||||  |||||||||||||| |||||||||    
T  9436575 aaaacacatgttttctagtgtttttgtgtggtgtatgtttccttccgatccagatctat 9436517  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36607797 - 36607851
Alignment:
Q  1 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagat 55  Q
    ||||||||||||||||| ||||||||   ||||||||||||||||| || |||||    
T  36607797 aaaacacaggttgtctgatgtttttgcttggtggttgtttccttccaatccagat 36607851  T

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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 25498863 - 25498767
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    ||||||||||||| |||||||||||| || ||||||||||||| |||||| |||||| ||||||| ||||||||||| |||| ||||||||||||||    
T  25498863 cttcaacggttggtttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgttgtga 25498767  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 38258847 - 38258762
Alignment:
Q  136 tcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttg 221  Q
    |||||||||||||||||||||||| |||||||||||||||| ||| || |||||||||||||| || |||||| ||||||||||||    
T  38258847 tcaacggttgggttcgatcagaaccttctcatccggttcgactaccctattatctggtggtttgtctatgtgggtcgatggtgttg 38258762  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 51056863 - 51056942
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcga 213  Q
    |||||||||||| ||||||||| ||| |||||| ||| || ||||||| |||||||||||||||| ||||||||||||||    
T  51056863 cttcaacggttgagttcgatcataaccttctcacccgatttgattactatgttatctggtggtttgtcgatgtggatcga 51056942  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 49358594 - 49358512
Alignment:
Q  142 gttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctg 224  Q
    |||||||||||||||||| ||||| || | ||||| |||||||||||||||||| || ||||| ||||| |||||||||||||    
T  49358594 gttgggttcgatcagaaccttctcgtctgattcgactactctgttatctggtggattgtcgatatggattgatggtgttgctg 49358512  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 51056733 - 51056789
Alignment:
Q  3 aacacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatctat 59  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||    
T  51056733 aacacaggttgtctggtgtttttgtatggtggttgtttccttctgatccagatctat 51056789  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 17113765 - 17113801
Alignment:
Q  178 tactctgttatctggtggtttatcgatgtggatcgat 214  Q
    ||||||||||||||||||||| |||||||||||||||    
T  17113765 tactctgttatctggtggtttgtcgatgtggatcgat 17113801  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 25498997 - 25498939
Alignment:
Q  1 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatctat 59  Q
    |||||||| ||| |||||||||| || | |||||||||||||||||||| || ||||||    
T  25498997 aaaacacaagttatctggtgtttatgcgtggtggttgtttccttccgatccatatctat 25498939  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 20519040 - 20518974
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  20519040 cttcaacggttgggttcgatcagaacattctcatccggttcgactactcttttatctggtggtttat 20518974  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 38149566 - 38149651
Alignment:
Q  145 gggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    ||||||||||||||| |||||| ||||||||  ||||||||||| ||||||||| |||| |||||||||||||| ||||| |||||    
T  38149566 gggttcgatcagaaccttctcacccggttcgggtactctgttatttggtggtttgtcgacgtggatcgatggtggtgctgctgtga 38149651  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 38149422 - 38149480
Alignment:
Q  1 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatctat 59  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  38149422 aaaacacatgttgtctggtgtttttgtgtggtggttgtttccttccgatccagatctat 38149480  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 20519173 - 20519115
Alignment:
Q  1 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatctat 59  Q
    |||||||| ||||||||| ||||||||| |||||||||||||||||||| |||||||||    
T  20519173 aaaacacaagttgtctggagtttttgtgtggtggttgtttccttccgatccagatctat 20519115  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 32919573 - 32919642
Alignment:
Q  161 ttctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    |||||| ||||||||  ||||||||||||||||||||| |||| |||||||||||||| ||||| |||||    
T  32919573 ttctcacccggttcgggtactctgttatctggtggtttgtcgacgtggatcgatggtggtgctgctgtga 32919642  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 32919437 - 32919480
Alignment:
Q  16 tggtgtttttgtgcggtggttgtttccttccgattcagatctat 59  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||    
T  32919437 tggtgcttttgtgtggtggttgtttccttccgatccagatctat 32919480  T

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Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 36592927 - 36592831
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    ||||||| |||||||||||||| ||| |||||| |||||| |  ||||||||||||||||||||| |||| |||||||||||||| |||||||||||    
T  36592927 cttcaactgttgggttcgatcataaccttctcacccggtttggctactctgttatctggtggtttgtcgacgtggatcgatggtggtgctgttgtga 36592831  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 5051411 - 5051321
Alignment:
Q  134 cttcaacggttgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctg 224  Q
    |||||||||||||||||||||| ||| ||||||||||||| || ||||||||||| ||||||||| | ||||||||||| |||| ||||||    
T  5051411 cttcaacggttgggttcgatcataaccttctcatccggtttgactactctgttatatggtggtttgttgatgtggatcgttggttttgctg 5051321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 1242751 - 1242665
Alignment:
Q  144 tgggttcgatcagaacattctcatccggttcgattactctgttatctggtggtttatcgatgtggatcgatggtgttgctgttgtga 230  Q
    |||||||||||| |||||| ||||||||||||| ||||   |||||||||||||| ||||  |||||||||| |||||||| |||||    
T  1242751 tgggttcgatcataacattttcatccggttcgactactacattatctggtggtttgtcgagatggatcgatgatgttgctgctgtga 1242665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 5051534 - 5051486
Alignment:
Q  11 ttgtctggtgtttttgtgcggtggttgtttccttccgattcagatctat 59  Q
    |||||||||||||||||| ||||||||||||||||| || |||||||||    
T  5051534 ttgtctggtgtttttgtgtggtggttgtttccttccaatccagatctat 5051486  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 36593060 - 36593002
Alignment:
Q  1 aaaacacaggttgtctggtgtttttgtgcggtggttgtttccttccgattcagatctat 59  Q
    |||||||| | ||||||||||||||||| |||| ||||||||||| ||| |||||||||    
T  36593060 aaaacacatgctgtctggtgtttttgtgtggtgattgtttccttctgatccagatctat 36593002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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