View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_344 (Length: 230)
Name: NF8912A_low_344
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_344 |
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Alignment Details
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 45596513 - 45596585
Alignment:
| Q |
1 |
gggaagtttcttaatgatttttatatcatcagcaagagaactaataaacctcttttcatcaaagatgtctgag |
73 |
Q |
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| T |
45596513 |
gggaagtttgttaatgatttttatatcatcagcaagagaactaataaacctcttttcgtcaaagatgtctgag |
45596585 |
T |
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Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 45596664 - 45596724
Alignment:
| Q |
164 |
ataaacctcgagaattaaaataaaaaatacctactatcttgccaaaatgactttttatcaa |
224 |
Q |
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| T |
45596664 |
ataaaccttgagaattaaaataaaaaatacctactatcttgccaaaatgactttttatcaa |
45596724 |
T |
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