View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912A_low_345 (Length: 230)

Name: NF8912A_low_345
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8912A_low_345
NF8912A_low_345
[»] chr5 (14 HSPs)
chr5 (30-229)||(29896700-29896899)
chr5 (22-229)||(22955460-22955667)
chr5 (20-211)||(34465156-34465347)
chr5 (51-229)||(1801700-1801878)
chr5 (51-229)||(7258459-7258637)
chr5 (51-229)||(7790396-7790574)
chr5 (51-229)||(12391950-12392128)
chr5 (45-223)||(36379496-36379674)
chr5 (45-223)||(37004168-37004346)
chr5 (45-223)||(5443730-5443908)
chr5 (45-223)||(17953561-17953739)
chr5 (45-223)||(11947929-11948107)
chr5 (45-223)||(15788247-15788425)
chr5 (45-223)||(31516769-31516947)
[»] chr1 (3 HSPs)
chr1 (30-229)||(2339975-2340174)
chr1 (51-229)||(6201487-6201665)
chr1 (45-223)||(5632647-5632825)
[»] chr7 (11 HSPs)
chr7 (30-230)||(841766-841966)
chr7 (30-230)||(848942-849142)
chr7 (30-230)||(1206946-1207146)
chr7 (20-211)||(16290792-16290983)
chr7 (29-211)||(801934-802116)
chr7 (51-229)||(23883312-23883490)
chr7 (51-229)||(42634783-42634961)
chr7 (51-220)||(8814027-8814196)
chr7 (45-223)||(9466044-9466222)
chr7 (45-223)||(30373472-30373650)
chr7 (45-223)||(16396975-16397153)
[»] chr2 (3 HSPs)
chr2 (20-211)||(21764034-21764225)
chr2 (45-223)||(22945855-22946033)
chr2 (45-223)||(12380120-12380298)
[»] scaffold0387 (1 HSPs)
scaffold0387 (20-229)||(5807-6016)
[»] chr6 (9 HSPs)
chr6 (45-229)||(2411975-2412159)
chr6 (22-229)||(20054609-20054816)
chr6 (51-229)||(20044396-20044574)
chr6 (51-229)||(16821526-16821704)
chr6 (51-229)||(24147211-24147389)
chr6 (51-229)||(27513527-27513705)
chr6 (51-220)||(619668-619837)
chr6 (20-230)||(2410407-2410613)
chr6 (45-223)||(9139923-9140101)
[»] scaffold0019 (1 HSPs)
scaffold0019 (22-229)||(17294-17501)
[»] scaffold0183 (1 HSPs)
scaffold0183 (22-229)||(31810-32017)
[»] chr3 (12 HSPs)
chr3 (20-211)||(20439609-20439800)
chr3 (20-211)||(41436774-41436965)
chr3 (51-229)||(6197981-6198159)
chr3 (51-229)||(8807897-8808075)
chr3 (51-229)||(15533637-15533815)
chr3 (51-229)||(21611327-21611505)
chr3 (51-229)||(46397011-46397189)
chr3 (51-229)||(8620021-8620200)
chr3 (20-229)||(15596519-15596728)
chr3 (20-229)||(15914993-15915202)
chr3 (45-223)||(46376735-46376913)
chr3 (45-223)||(5954477-5954655)
[»] scaffold0551 (2 HSPs)
scaffold0551 (51-229)||(9879-10057)
scaffold0551 (108-229)||(3822-3943)
[»] scaffold0435 (1 HSPs)
scaffold0435 (51-229)||(12431-12609)
[»] chr4 (7 HSPs)
chr4 (51-211)||(15575638-15575798)
chr4 (42-229)||(16724575-16724762)
chr4 (51-229)||(15899271-15899449)
chr4 (51-229)||(18039841-18040019)
chr4 (51-220)||(14920939-14921108)
chr4 (51-229)||(22707531-22707709)
chr4 (51-220)||(15571510-15571679)
[»] chr8 (1 HSPs)
chr8 (51-229)||(21479703-21479881)
[»] scaffold1197 (1 HSPs)
scaffold1197 (48-229)||(2106-2287)
[»] scaffold0029 (2 HSPs)
scaffold0029 (42-192)||(74786-74936)
scaffold0029 (45-223)||(25623-25801)
[»] scaffold0441 (1 HSPs)
scaffold0441 (51-192)||(10654-10795)
[»] scaffold0104 (1 HSPs)
scaffold0104 (22-229)||(28843-29050)
[»] scaffold0094 (1 HSPs)
scaffold0094 (20-229)||(38868-39077)
[»] scaffold0002 (1 HSPs)
scaffold0002 (45-223)||(302366-302544)
[»] scaffold0595 (1 HSPs)
scaffold0595 (45-223)||(9440-9619)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 30 - 229
Target Start/End: Complemental strand, 29896899 - 29896700
Alignment:
Q  30 gaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacca 129  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||| ||||||||||||    
T  29896899 gaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggcgtacttccgacca 29896800  T
Q  130 tcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  29896799 tcttctcgtagtagaaatgattgagagtttttaagaagatcttggtcatctccttctcttctatacgtgggctgacttgggcagcggtatctctccatcg 29896700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 22955460 - 22955667
Alignment:
Q  22 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 121  Q
    |||| ||||||| ||||| ||| ||||| ||||||||||| |||||| ||||||| ||||||||||| || ||||| ||| |||||||||||||| ||||    
T  22955460 cactggcagaagttccatttttgactaaacgtccttctcggactccttcttccaattgtacacccataccgaccatttctgcaaagttcttgggcgtact 22955559  T
Q  122 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 221  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||||  |||||||||||||||||||||||||| || ||||||||||| ||  |||||    
T  22955560 tccgaccatcttctcgtagtagaactgactaagagtttttaagaagaatttggtcatctccttctcttctatacgcgggctgacttgggcagcaatatct 22955659  T
Q  222 cttcatcg 229  Q
    || |||||    
T  22955660 ctccatcg 22955667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 34465347 - 34465156
Alignment:
Q  20 tccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcata 119  Q
    |||||| | |||| |||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||||||||| ||  ||||||| |||||| ||    
T  34465347 tccactggtagaaactccatcttttactaaacgtccttctcggactccttcttccaactgcacacccatgccaaccatttcagcaaagtttttgggcgta 34465248  T
Q  120 cttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 211  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||| ||||||||||||||||| || |||||||||||    
T  34465247 cttccgaccatcttctcgtagtagaactgactgagagtttttaagaaaagtttggtcatttccttctcttctatacgtgggctgacttgggc 34465156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 51 - 229
Target Start/End: Complemental strand, 1801878 - 1801700
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  1801878 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 1801779  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || |||||    
T  1801778 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcg 1801700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 7258459 - 7258637
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  7258459 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 7258558  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || |||||    
T  7258559 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcg 7258637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 51 - 229
Target Start/End: Complemental strand, 7790574 - 7790396
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  7790574 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 7790475  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || |||||    
T  7790474 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcg 7790396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 12391950 - 12392128
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  12391950 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 12392049  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| |||||||| || |||||    
T  12392050 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatccctccatcg 12392128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 36379496 - 36379674
Alignment:
Q  45 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 144  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||| | ||| |||| ||  |||| ||||||||||| | |||||| |    
T  36379496 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctctgcgaagctctttggtgtactcccgaccatctttttgtagtaaa 36379595  T
Q  145 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 223  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  36379596 aatgatttagagtttttaggaagagcttggtcatctctttctcctcaatgcgtgggctgacttgggcagcggtgtctct 36379674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 37004168 - 37004346
Alignment:
Q  45 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 144  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||| | ||| |||| ||  |||| ||||||||||| | |||||| |    
T  37004168 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctctgcgaagctctttggtgtactcccgaccatctttttgtagtaaa 37004267  T
Q  145 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 223  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  37004268 aatgatttagagtttttaggaagagcttggtcatctctttctcctcaatgcgtgggctgacttgggcagcggtgtctct 37004346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 5443730 - 5443908
Alignment:
Q  45 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 144  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  5443730 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 5443829  T
Q  145 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 223  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || ||||| || ||||||||||| ||||| |||||    
T  5443830 aatgattcagagtttttaggaagagcttggtcatctctttctcctcaatacgtgggctgacttgggcagcggtgtctct 5443908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 223
Target Start/End: Complemental strand, 17953739 - 17953561
Alignment:
Q  45 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 144  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||| | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  17953739 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctctgcgaagctctttggtgtactcccgaccatctttttgtaataaa 17953640  T
Q  145 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 223  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  17953639 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 17953561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 11947929 - 11948107
Alignment:
Q  45 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 144  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  11947929 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 11948028  T
Q  145 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 223  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  11948029 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 11948107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 15788247 - 15788425
Alignment:
Q  45 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 144  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  15788247 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 15788346  T
Q  145 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 223  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  15788347 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 15788425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 45 - 223
Target Start/End: Complemental strand, 31516947 - 31516769
Alignment:
Q  45 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 144  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  31516947 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 31516848  T
Q  145 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 223  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  31516847 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 31516769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 30 - 229
Target Start/End: Original strand, 2339975 - 2340174
Alignment:
Q  30 gaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacca 129  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||| ||||||||||||    
T  2339975 gaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggcgtacttccgacca 2340074  T
Q  130 tcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  2340075 tcttctcgtagtagaaatgattgagagtttttaagaagatcttggtcatctccttctcttctatacgtgggctgacttgggcagcggtatctctccatcg 2340174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 6201487 - 6201665
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||| ||||| || || |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  6201487 cgtccttctcggactccttcttccaattgtacgcctataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaactgat 6201586  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    | || ||||||||||||| |||| ||||||| |||||||||| ||| ||  |||||||||| |||||||| || |||||    
T  6201587 taagggtttttaagaagagcttgatcatctctttctcttctacacgcgggatgacttgggcagcggtatccctccatcg 6201665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 5632647 - 5632825
Alignment:
Q  45 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 144  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||| ||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  5632647 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatttccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 5632746  T
Q  145 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 223  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  5632747 aatgatttagagtttttaggaagagcttggtcatctctttctcctcaatgcgtgggctgacttgggcagcggtgtctct 5632825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 841966 - 841766
Alignment:
Q  30 gaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacca 129  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  |||||||||||||| ||||||||||||    
T  841966 gaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacacccataccaaccatctcagcaaagttcttgggcgtacttccgacca 841867  T
Q  130 tcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||| ||||||||||| |||||    
T  841866 tcttctcgtagtagaactgattgagagtttttaagaagatcttggtcatctctttctcctctatacgtgggctgacttgggcagcggtatctctccatcg 841767  T
Q  230 a 230  Q
    |    
T  841766 a 841766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 849142 - 848942
Alignment:
Q  30 gaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacca 129  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  |||||||||||||| ||||||||||||    
T  849142 gaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacacccataccaaccatctcagcaaagttcttgggcgtacttccgacca 849043  T
Q  130 tcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||| ||||||||||| |||||    
T  849042 tcttctcgtagtagaactgattgagagtttttaagaagatcttggtcatctctttctcctctatacgtgggctgacttgggcagcggtatctctccatcg 848943  T
Q  230 a 230  Q
    |    
T  848942 a 848942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 1207146 - 1206946
Alignment:
Q  30 gaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacca 129  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  |||||||||||||| ||||||||||||    
T  1207146 gaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacacccataccaaccatctcagcaaagttcttgggcgtacttccgacca 1207047  T
Q  130 tcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||| ||||||||||| |||||    
T  1207046 tcttctcgtagtagaactgattgagagtttttaagaagatcttggtcatctctttctcctctatacgtgggctgacttgggcagcggtatctctccatcg 1206947  T
Q  230 a 230  Q
    |    
T  1206946 a 1206946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 16290792 - 16290983
Alignment:
Q  20 tccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcata 119  Q
    |||||| | ||||||||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||| ||||| ||  | |||||||||||| ||    
T  16290792 tccactggtagaagctccatcttttactaaacgtccttctcggactccttcttccaactgcacacccatgccgaccatttcagcgaagttcttgggcgta 16290891  T
Q  120 cttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 211  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||| ||||||||||||||||| || |||||||||||    
T  16290892 cttccgaccatcttctcgtagtagaactgactgagagtttttaagaaaagtttggtcatttccttctcttctatacgtgggctgacttgggc 16290983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 29 - 211
Target Start/End: Original strand, 801934 - 802116
Alignment:
Q  29 agaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacc 128  Q
    ||||||||||| ||| ||||| | ||||||||| |||||| ||||||| || ||||||||||||||||| ||  |||||||||||||| |||||||||||    
T  801934 agaagctccattttttactaaacatccttctcggactccttcttccaattgcacacccatgccaaccatttcagcaaagttcttgggcgtacttccgacc 802033  T
Q  129 atcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 211  Q
    ||||||||||||||||| ||| ||||||||||||||||||  |||||||| ||||||||||||||||| || |||||||||||    
T  802034 atcttctcgtagtagaactgactgagagtttttaagaagagtttggtcatttccttctcttctatacgtgggctgacttgggc 802116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 23883312 - 23883490
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  23883312 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 23883411  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| |||||||| || |||||    
T  23883412 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatccctccatcg 23883490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 42634783 - 42634961
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  42634783 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 42634882  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || |||||    
T  42634883 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcg 42634961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 51 - 220
Target Start/End: Complemental strand, 8814196 - 8814027
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| |||| |||| ||||    
T  8814196 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagcagaactgat 8814097  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 220  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  8814096 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 8814027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 223
Target Start/End: Complemental strand, 9466222 - 9466044
Alignment:
Q  45 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 144  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  9466222 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 9466123  T
Q  145 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 223  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  9466122 aatgattcagagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 9466044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 30373472 - 30373650
Alignment:
Q  45 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 144  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||||||||||||||| | ||| || |    
T  30373472 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtacttccgaccatctttttgtaataaa 30373571  T
Q  145 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 223  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  30373572 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaatccgtgggctgacttgggcagcggtgtctct 30373650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 16396975 - 16397153
Alignment:
Q  45 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 144  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  16396975 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 16397074  T
Q  145 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 223  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  16397075 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 16397153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 21764034 - 21764225
Alignment:
Q  20 tccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcata 119  Q
    |||||||||||||||||||||||| ||||| ||||||||||| |||||| |||||||||| |||||||| |||||||||||  | |||||||||||| ||    
T  21764034 tccactagcagaagctccatcttttactaaacgtccttctcggactccttcttccaactgcacacccataccaaccatctcagcgaagttcttgggcgta 21764133  T
Q  120 cttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 211  Q
    |||||||||||||||||||||||||| ||| | ||||||||||||||||  |||||||| ||||||||||||||||| || |||||||||||    
T  21764134 cttccgaccatcttctcgtagtagaactgactaagagtttttaagaagagtttggtcatttccttctcttctatacgcgggctgacttgggc 21764225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 223
Target Start/End: Complemental strand, 22946033 - 22945855
Alignment:
Q  45 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 144  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  22946033 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 22945934  T
Q  145 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 223  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  22945933 aatgattcagagtttttaggaagagcttggtcatctctttctcctcaatgcgtgggctgacttgggcagcggtgtctct 22945855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 45 - 223
Target Start/End: Complemental strand, 12380298 - 12380120
Alignment:
Q  45 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 144  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  12380298 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 12380199  T
Q  145 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 223  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  12380198 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 12380120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0387 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 5807 - 6016
Alignment:
Q  20 tccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcata 119  Q
    |||||| | ||||| | |||| || ||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  | ||||| |||||| ||    
T  5807 tccactggaagaagttacatcctttactaaacgtccttctcggactccttcttccaactgtacacccataccaaccatctcagcgaagtttttgggcgta 5906  T
Q  120 cttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtat 219  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||| |  ||||||||||| |||||||    
T  5907 cttccgaccatcttctcgtagtagaactgatttagagtttttaagaagagcttggtcatctctttctcttctatacgtgagctgacttgggcagcggtat 6006  T
Q  220 ctcttcatcg 229  Q
    ||||||||||    
T  6007 ctcttcatcg 6016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 9e-60; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 45 - 229
Target Start/End: Complemental strand, 2412159 - 2411975
Alignment:
Q  45 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 144  Q
    ||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||    
T  2412159 actaaacgtccttctcgcactccttcttccaactgtacacccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtaga 2412060  T
Q  145 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    | |||||||||||||||||||| | |||||||||||  || ||||||||||| ||||| |||||||| ||||||||||| |||||    
T  2412059 actgattgagagtttttaagaaaagcttggtcatctttttttcttctatacgcggactaacttgggcagcggtatctctccatcg 2411975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 20054609 - 20054816
Alignment:
Q  22 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 121  Q
    |||| ||||||| | ||||| ||||||| ||||||||||| |||||| ||||||||||||||||||| || ||||||||  |||||||||||||| ||||    
T  20054609 cactggcagaagtttcatctctaactaaacgtccttctcggactccttcttccaactgtacacccataccgaccatctcagcaaagttcttgggcgtact 20054708  T
Q  122 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 221  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||| |||||||||| ||  ||  |||||||||| | ||||||     
T  20054709 tccgaccatcttctcgtagtagaactgattgagagtttttaagaagagtttggtcatctctttctcttctacacacgggatgacttgggcagtggtatcc 20054808  T
Q  222 cttcatcg 229  Q
    || |||||    
T  20054809 ctccatcg 20054816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 20044396 - 20044574
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  20044396 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 20044495  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || |||||    
T  20044496 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcg 20044574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 16821526 - 16821704
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  16821526 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 16821625  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    ||||||||||||||||||  |||||||| || |||||||||| ||| || ||||||||||| |||||||| || |||||    
T  16821626 tgagagtttttaagaagaggttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcg 16821704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 24147211 - 24147389
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  24147211 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 24147310  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||||| ||||||||| || |||||||||| | | || ||||||||||| |||||||| || |||||    
T  24147311 tgagagtttttaagaagagcttggtcatttctttctcttctacatgcgggctgacttgggcagcggtatccctccatcg 24147389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 51 - 229
Target Start/End: Complemental strand, 27513705 - 27513527
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||  |||||||||||||||||||||||||||| ||||    
T  27513705 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgtacttccgaccatcttctcgtagtagaactgat 27513606  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    | |||||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||| || |||||||| || |||||    
T  27513605 taagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgagcagcggtatccctccatcg 27513527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 51 - 220
Target Start/End: Original strand, 619668 - 619837
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| |||| |||| ||||    
T  619668 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagcagaactgat 619767  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 220  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  619768 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 619837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 2410407 - 2410613
Alignment:
Q  20 tccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcata 119  Q
    |||||| | |||||||||||| || ||||| ||||||| ||  | |||| ||||||||||||||||||| |||||||||||  |||||||||||||| ||    
T  2410407 tccactggtagaagctccatcctttactaaacgtccttttcagattccttcttccaactgtacacccataccaaccatctcagcaaagttcttgggcgta 2410506  T
Q  120 cttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtat 219  Q
    |||||||||||||||||||||||    | | |||||||||||||||| |||||||||||||| || ||||||||||| || || |||||||  || ||||    
T  2410507 cttccgaccatcttctcgtagta----taactgagagtttttaagaaaatcttggtcatctctttttcttctatacgcgggctaacttgggtagcagtat 2410602  T
Q  220 ctcttcatcga 230  Q
    |||| ||||||    
T  2410603 ctctccatcga 2410613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 9139923 - 9140101
Alignment:
Q  45 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 144  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  9139923 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 9140022  T
Q  145 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 223  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  9140023 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 9140101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 17294 - 17501
Alignment:
Q  22 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 121  Q
    |||| ||||||| ||||||| | ||||| ||||||||||| |||||| ||||||||||||||||||| || ||||| ||| |||||||||||||| || |    
T  17294 cactggcagaagttccatctctgactaaacgtccttctcggactccttcttccaactgtacacccataccgaccatttctgcaaagttcttgggcgtatt 17393  T
Q  122 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 221  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||||  |||||||||||||||||||||||||| || |||| |||||| || ||||||    
T  17394 tccgaccatcttctcgtagtagaactgatcaagagtttttaagaagagtttggtcatctccttctcttctatacgcgggctgatttgggcagcagtatct 17493  T
Q  222 cttcatcg 229  Q
    || |||||    
T  17494 ctccatcg 17501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 32017 - 31810
Alignment:
Q  22 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 121  Q
    |||| ||||||| ||||||| ||||||| ||||||||||| | |||| ||||||||||||| ||||| |  ||||| ||| |||||||||||||| ||||    
T  32017 cactggcagaagttccatctctaactaaacgtccttctcggattccttcttccaactgtacgcccatactgaccatttctgcaaagttcttgggcgtact 31918  T
Q  122 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 221  Q
    |||||||||| ||||||||||||||||||  ||||||||||||||||  |||||||||||||||||||||||||| || ||||||||||| || || |||    
T  31917 tccgaccatcctctcgtagtagaattgatcaagagtttttaagaagagtttggtcatctccttctcttctatacgcgggctgacttgggcagcagtgtct 31818  T
Q  222 cttcatcg 229  Q
    || |||||    
T  31817 ctccatcg 31810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 20439800 - 20439609
Alignment:
Q  20 tccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcata 119  Q
    |||||| | |||| |||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||||||||| ||  ||||||| |||||| ||    
T  20439800 tccactggtagaaactccatcttttactaaacgtccttctcggactccttcttccaactgcacacccatgccaaccatttcagcaaagtttttgggcgta 20439701  T
Q  120 cttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 211  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||| ||||||||||||||||| || |||||||||||    
T  20439700 cttccgaccatcttctcgtagtagaactgactgagagtttttaagaaaagtttggtcatttccttctcttctatacgtgggctgacttgggc 20439609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 41436965 - 41436774
Alignment:
Q  20 tccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcata 119  Q
    |||||| | |||| |||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||||||||| ||  ||||||| |||||| ||    
T  41436965 tccactggtagaaactccatcttttactaaacgtccttctcggactccttcttccaactgcacacccatgccaaccatttcagcaaagtttttgggcgta 41436866  T
Q  120 cttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 211  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||| ||||||||||||||||| || |||||||||||    
T  41436865 cttccgaccatcttctcgtagtagaactgactgagagtttttaagaaaagtttggtcatttccttctcttctatacgtgggctgacttgggc 41436774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 51 - 229
Target Start/End: Complemental strand, 6198159 - 6197981
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  6198159 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 6198060  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || |||||    
T  6198059 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcg 6197981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 51 - 229
Target Start/End: Complemental strand, 8808075 - 8807897
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  8808075 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 8807976  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| |||||||| || |||||    
T  8807975 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatccctccatcg 8807897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 15533637 - 15533815
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  15533637 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 15533736  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || |||||    
T  15533737 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcg 15533815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 51 - 229
Target Start/End: Complemental strand, 21611505 - 21611327
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  21611505 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 21611406  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| |||||||| || |||||    
T  21611405 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatccctccatcg 21611327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 46397011 - 46397189
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  46397011 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 46397110  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || |||||    
T  46397111 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcg 46397189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 51 - 229
Target Start/End: Complemental strand, 8620200 - 8620021
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  8620200 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 8620101  T
Q  151 tgagagt-ttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    ||||||| ||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || |||||    
T  8620100 tgagagttttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcg 8620021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 15596519 - 15596728
Alignment:
Q  20 tccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcata 119  Q
    |||||| ||||||| | ||||||| ||||| ||||||| ||| || ||| |||||||||| |||||||| |||||||||||  |||||||||||||| ||    
T  15596519 tccactggcagaagttgcatcttttactaaacgtccttgtcggaccccttcttccaactgcacacccataccaaccatctcagcaaagttcttgggcgta 15596618  T
Q  120 cttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtat 219  Q
    ||||| |||||| | |||||||||||    ||||||||||||||||||| ||||||||||||||| || |||||||| ||  |||||||||| |||||||    
T  15596619 cttccaaccatcctttcgtagtagaaagagttgagagtttttaagaagagcttggtcatctccttttcctctatacgcgggttgacttgggcagcggtat 15596718  T
Q  220 ctcttcatcg 229  Q
    |||| |||||    
T  15596719 ctctccatcg 15596728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 15915202 - 15914993
Alignment:
Q  20 tccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcata 119  Q
    |||||| ||||||| | ||||||| ||||| ||||||||||| || ||| |||||||||| |||||||| |||||||||||  |||||||||||||| ||    
T  15915202 tccactggcagaagttgcatcttttactaaacgtccttctcggaccccttcttccaactgcacacccataccaaccatctcagcaaagttcttgggcgta 15915103  T
Q  120 cttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtat 219  Q
    ||||| |||||| | |||||||||||    |||||||||||||||||||  |||||||||||||| || |||||||  ||  |||||||||| | |||||    
T  15915102 cttccaaccatcctttcgtagtagaaagagttgagagtttttaagaagagtttggtcatctccttttcctctatacacgggttgacttgggcagtggtat 15915003  T
Q  220 ctcttcatcg 229  Q
    |||| |||||    
T  15915002 ctctccatcg 15914993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 223
Target Start/End: Complemental strand, 46376913 - 46376735
Alignment:
Q  45 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 144  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  46376913 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 46376814  T
Q  145 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 223  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  46376813 aatgatttagagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 46376735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 5954477 - 5954655
Alignment:
Q  45 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 144  Q
    ||||| ||||||||||| |||||| |||| ||||| || ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  5954477 actaagcgtccttctcggactccttcttctaactggactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 5954576  T
Q  145 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 223  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  5954577 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 5954655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 9879 - 10057
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  9879 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggcgtacttctgaccatcttctcgtagtagaactgat 9978  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| |||||||| || |||||    
T  9979 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatccctccatcg 10057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 108 - 229
Target Start/End: Original strand, 3822 - 3943
Alignment:
Q  108 ttcttgggcatacttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgactt 207  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||    
T  3822 ttcttgggcgtacttctgaccatcttctcgtagtagaactgattgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgactt 3921  T
Q  208 gggccgcggtatctcttcatcg 229  Q
    |||| |||||||| || |||||    
T  3922 gggcagcggtatccctccatcg 3943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 12431 - 12609
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  12431 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaactgat 12530  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    | |||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||| ||||||| |||||    
T  12531 taagagtttttaagaagagcttggtcatatctttctcttctacacgcgggctgacttgggcagcgatatctctccatcg 12609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 51 - 211
Target Start/End: Original strand, 15575638 - 15575798
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  15575638 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaactgat 15575737  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 211  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||||||    
T  15575738 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggc 15575798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 42 - 229
Target Start/End: Original strand, 16724575 - 16724762
Alignment:
Q  42 ttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagt 141  Q
    ||||| || ||||||||||| |||||| ||||||| ||||| ||||| |||||||||||  |||||||||||||| ||||||||||||||||||||||||    
T  16724575 ttaaccaatcgtccttctcggactccttcttccaattgtacgcccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagt 16724674  T
Q  142 agaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||| |||||||||||||||||||||| |||||||||||| |||||||||| ||  ||  |||||||||| |||||||| || |||||    
T  16724675 agaactgattgagagtttttaagaagagcttggtcatctctttctcttctacactcgggatgacttgggcagcggtatccctccatcg 16724762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 15899271 - 15899449
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||  |||||||||||||||||||||||||||  ||||    
T  15899271 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgtacttccgaccatcttctcgtagtagatctgat 15899370  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    ||||||||||||| |||| |||||||||||| |||||||||| ||| ||  |||||||||| |||||||| || |||||    
T  15899371 tgagagtttttaaaaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatccctccatcg 15899449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 51 - 229
Target Start/End: Complemental strand, 18040019 - 18039841
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||  |||||||||||||||||||||||||||| ||||    
T  18040019 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgtacttccgaccatcttctcgtagtagaactgat 18039920  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    | |||||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||| || |||||||| || |||||    
T  18039919 taagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgagcagcggtatccctccatcg 18039841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 51 - 220
Target Start/End: Complemental strand, 14921108 - 14920939
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||   ||||||||||||||||||||||||||| ||||    
T  14921108 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgcacttccgaccatcttctcgtagtagaactgat 14921009  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 220  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||| ||||    
T  14921008 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcgatatc 14920939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 51 - 229
Target Start/End: Complemental strand, 22707709 - 22707531
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |  ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  22707709 cgtccttctcggatcccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 22707610  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| ||  |||||||||| |||||||| || |||||    
T  22707609 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggatgacttgggcagcggtatccctccatcg 22707531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 51 - 220
Target Start/End: Original strand, 15571510 - 15571679
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||   ||||| ||||||||||||||||||||| ||||    
T  15571510 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggagaacttcagaccatcttctcgtagtagaactgat 15571609  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 220  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||| ||||    
T  15571610 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcgatatc 15571679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 21479703 - 21479881
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  21479703 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 21479802  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || |||||    
T  21479803 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcg 21479881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1197 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold1197
Description:

Target: scaffold1197; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 48 - 229
Target Start/End: Complemental strand, 2287 - 2106
Alignment:
Q  48 aaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaatt 147  Q
    |||||||||||||| |||||| ||||||||||||| ||||| |||||||||||  ||||||||| |||| |||||||||||||||||||||||||||| |    
T  2287 aaccgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttctagggcgtacttccgaccatcttctcgtagtagaact 2188  T
Q  148 gattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 229  Q
    ||||||||||||||||||||| |||||||||||| || ||||||| ||| ||  ||||||| || ||| |||| || |||||    
T  2187 gattgagagtttttaagaagagcttggtcatctctttttcttctacacgcgggatgacttgtgcagcgttatccctccatcg 2106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 42 - 192
Target Start/End: Complemental strand, 74936 - 74786
Alignment:
Q  42 ttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagt 141  Q
    ||||| || ||||||||||| |||||| ||||||| ||||| ||||| |||||||||||  |||||||||||||| |||| |||||||||||||||||||    
T  74936 ttaaccaatcgtccttctcggactccttcttccaattgtacgcccataccaaccatctcagcaaagttcttgggcgtactgccgaccatcttctcgtagt 74837  T
Q  142 agaattgattgagagtttttaagaagatcttggtcatctccttctcttcta 192  Q
    |||| |||||||||||||||||||||| |||||||||||| ||||||||||    
T  74836 agaactgattgagagtttttaagaagagcttggtcatctctttctcttcta 74786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 45 - 223
Target Start/End: Complemental strand, 25801 - 25623
Alignment:
Q  45 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 144  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  25801 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 25702  T
Q  145 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 223  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  25701 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 25623  T

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Target: scaffold0441 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 51 - 192
Target Start/End: Complemental strand, 10795 - 10654
Alignment:
Q  51 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 150  Q
    |||| ||||||||||||| ||||||||||||| ||||| |||||||||||  |||||||||||||  |||||||| ||||||||||||||||||| ||||    
T  10795 cgtctttctcgtactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgtacttccgtccatcttctcgtagtagaactgat 10696  T
Q  151 tgagagtttttaagaagatcttggtcatctccttctcttcta 192  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  10695 tgagagtttttaagaagagcttggtcatctctttctcttcta 10654  T

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Target: scaffold0104 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 28843 - 29050
Alignment:
Q  22 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 121  Q
    |||| ||||||| || |||| ||||||| ||||||||||| ||||||  ||||||||||||  |||| |||||||||||  |||||||||||||| ||||    
T  28843 cactggcagaagttctatctctaactaaacgtccttctcggactcctttttccaactgtacgtccataccaaccatctcagcaaagttcttgggcgtact 28942  T
Q  122 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacg-aggactgacttgggccgcggtatc 220  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||  ||||||||||| ||||||| |  ||| |||| |||||||||| ||||||||    
T  28943 tccgaccatcttctcgtagtagaactgattgagggtttttaagaagagtttggtcatctctttctcttatgcacgcagga-tgacttgggcagcggtatc 29041  T
Q  221 tcttcatcg 229  Q
     || |||||    
T  29042 cctccatcg 29050  T

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Target: scaffold0094 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 38868 - 39077
Alignment:
Q  20 tccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcata 119  Q
    |||||| ||||||| | ||||||| ||||| ||||||||||| || ||| |||||||||| |||||||| |||||||||||  |||||||||||||| ||    
T  38868 tccactggcagaagttgcatcttttactaaacgtccttctcggaccccttcttccaactgcacacccataccaaccatctcagcaaagttcttgggcgta 38967  T
Q  120 cttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtat 219  Q
    ||||| |||||| | |||||||||||    |||||||||||||||||||  |||||||||||||| || |||||||| ||  |||||||||| | |||||    
T  38968 cttccaaccatcctttcgtagtagaaagagttgagagtttttaagaagagtttggtcatctccttttcctctatacgcgggttgacttgggcagtggtat 39067  T
Q  220 ctcttcatcg 229  Q
    |||| |||||    
T  39068 ctctccatcg 39077  T

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Target: scaffold0002 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 45 - 223
Target Start/End: Complemental strand, 302544 - 302366
Alignment:
Q  45 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 144  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  302544 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 302445  T
Q  145 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 223  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  302444 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 302366  T

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Target: scaffold0595 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 223
Target Start/End: Complemental strand, 9619 - 9440
Alignment:
Q  45 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagt-ag 143  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| || |||||||| | ||| | |     
T  9619 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccaaccatctttttgtaataaa 9520  T
Q  144 aattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 223  Q
    || ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  9519 aaatgatttaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 9440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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