View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_35 (Length: 410)
Name: NF8912A_low_35
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 4322516 - 4322919
Alignment:
| Q |
1 |
aatattcaaaatcaaaatatcgaattaatccttttatttagcagaaaaaatttgattaattcttatcaaacaagtaaaatgtacatgcaacgatgcagct |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4322516 |
aatattcaaaatcagaatatcgaattaatccttttatttagcagaattttttttattaattcttatcaaacaagtaaaatgtacatgcaacgcataagct |
4322615 |
T |
|
| Q |
101 |
ttatttaattacgatatatgaagaaaatatacgtgaccttatatcctctttcaatgtatttgatagcaacaagttctcctgtcttcttgtctttagccaa |
200 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4322616 |
ttatttaattaagatatatgaagaaaatatacttgaccttatatcctctttcaatgtatttgatagcaacaagttctcctgtctttttgtctttagccaa |
4322715 |
T |
|
| Q |
201 |
cctagtcactccaaagtttccagaaccaaggtccttcaatatctcgtatctttcctcctccatttcacagtccaaataatactgttcaagtgacgatcca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4322716 |
cctagtcactccaaagtttccagaaccaaggtccttcaatatctcgtatctttcctcctccatttcacagtccaaataatactgttcaattgacgatcca |
4322815 |
T |
|
| Q |
301 |
atgataaaaatgaatgaaaaataagtgatttagtcaaaactgaaataacattgtaatgaaaatgagaaggagaaaaatgtgaattagaaattagacaaag |
400 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4322816 |
atgataaaaatgaataaaacataagtgatttagtcaaaactgaaataacattgtaatgaaaatgagaaggagaaaaatgtgaattagaaattagacaaag |
4322915 |
T |
|
| Q |
401 |
aaaa |
404 |
Q |
| |
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|||| |
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| T |
4322916 |
aaaa |
4322919 |
T |
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Back To:
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Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 41124498 - 41124398
Alignment:
| Q |
154 |
atgtatttgatagcaacaagttctcctgtcttcttgtctttagccaacctagtcactccaaagtttccagaaccaaggtccttcaatatctcgtatcttt |
253 |
Q |
| |
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|||||||||| |||||||||||| || || || ||||||||||||||||||| || ||||| |||||||||||||| ||||||||| ||| ||||||| |
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| T |
41124498 |
atgtatttgagagcaacaagttccccagtatttttgtctttagccaacctagcaacaccaaaatttccagaaccaagttccttcaatggctcatatcttt |
41124399 |
T |
|
| Q |
254 |
c |
254 |
Q |
| |
|
| |
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|
| T |
41124398 |
c |
41124398 |
T |
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