View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8912A_low_350 (Length: 229)
Name: NF8912A_low_350
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_350 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 38567070 - 38567284
Alignment:
| Q |
9 |
ttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggataactgaaata |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567070 |
ttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggataactgaaata |
38567169 |
T |
|
| Q |
109 |
aacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacatt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567170 |
aacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacatt |
38567269 |
T |
|
| Q |
209 |
ttgtaagccgccgcc |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38567270 |
ttgtaagccgccgcc |
38567284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 38525945 - 38526162
Alignment:
| Q |
9 |
ttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggataactgaaata |
108 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38525945 |
ttccactttgtccaaccaatgccgcggttgttccgcttgatatatgaagagagaatccattgaatatcagctcctcaggtcttgccggataactgaaata |
38526044 |
T |
|
| Q |
109 |
aacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacatt |
208 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38526045 |
aacttctttcaactctatctcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacatt |
38526144 |
T |
|
| Q |
209 |
ttgtaagccgccgcctga |
226 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
38526145 |
ttgtaagccgccgcctga |
38526162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University