View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912A_low_356 (Length: 228)

Name: NF8912A_low_356

Description: NF8912A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF8912A_low_356

[»] chr6 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 137; E-Value: 1e-71

Query Start/End: Original strand, 17 - 213

Target Start/End: Complemental strand, 16438403 - 16438208

Alignment:

Q	17	ttggtgttgttgggttgggagtttgaattttaatggtgattttgagcgtggtggtgaattttggttgaagtgatgatgacgagtttgcgggttgattcca	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|
T	16438403	ttggtgttgttgggttagaagtttgaattttaatggtgattttgagcgtggtggtgaattttggttgaagtgatgatgaggagtttgtgggttggttcca	16438304	T

Q	117	tttttgggggtttgttttgtttctctttctttatctgctctttgtcaccttcgatttggatcaatctccactgtcgctgccatttttgtgttgatgt	213	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	16438303	tttttgagggtttgttttgtttttctttctttgtctac-ctttgttaccttcgatttggatccatctccaaagtcgctgccatttttgtgttgatgt	16438208	T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 17 - 93

Target Start/End: Complemental strand, 39041807 - 39041731

Alignment:

Q	17	ttggtgttgttgggttgggagtttgaattttaatggtgattttgagcgtggtggtgaattttggttgaagtgatgat	93	Q
		\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\| \|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	39041807	ttggtgatgttggactgggagttggaatgttaattgtgatcttgtgtgtggtggtgaattttggttgtggtgatgat	39041731	T

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