View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_363 (Length: 227)
Name: NF8912A_low_363
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_363 |
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| [»] chr6 (3 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 17451381 - 17451607
Alignment:
| Q |
1 |
aaaggttatcgatgttgggatccaatttctcaacgcattcgcacctcccgtcatgttgtcatttgggaacaaaaaatgttctcttccttgtcaaaatttg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||| |
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| T |
17451381 |
aaaggttatcgatgttgggatcccatttctcaacgcattcgcacctcccgtcatgttgtcttttgggaacataaaatgttctcttccttgtcaaattttg |
17451480 |
T |
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| Q |
101 |
tttcaattccgtccacttccactcctttatttactaaccctaatgttgactattttaatagtgacacatatgcaggttcttctagtgagctctcttcccc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17451481 |
tttcaattccgtccacttccactcctttatttactaaccctgatgttgactattttaatagtgacacatatgcaggttcttctagtgagctctcttcccc |
17451580 |
T |
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| Q |
201 |
ttccgatgttccatccacttcaaatga |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
17451581 |
ttccgatgttccatccacttcaaatga |
17451607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 5241712 - 5241533
Alignment:
| Q |
1 |
aaaggttatcgatgttgggatccaatttctcaacgcattcgcacctcccgtcatgttgtcatttgggaacaaaaaatgttctcttccttgtcaaaatttg |
100 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||| ||| || ||||||||| |||||||||| | ||||||||||||||||||||| ||| |
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| T |
5241712 |
aaaggttatcgatgttgggatccaatatcgcaacgcattcgcatctctcgccatgttgtcttttgggaacatataatgttctcttccttgtcaaagttta |
5241613 |
T |
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| Q |
101 |
tttcaattccgtccacttccactcctttatttactaaccctaatgttgactattttaatagtgacacatatgcaggttct |
180 |
Q |
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| T |
5241612 |
agtcaatcccgtctacttccactcctctctttactaaccctgatgttgacctttttcctagtgacacgcatgcaggttct |
5241533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 14826104 - 14826198
Alignment:
| Q |
1 |
aaaggttatcgatgttgggatccaatttctcaacgcattcgcacctcccgtcatgttgtcatttgggaacaaaaaatgttctcttccttgtcaaa |
95 |
Q |
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||||||| ||||||||||| || || || ||| ||||||| | || |||||||||||| |||||||||| | |||||||||||| |||||||| |
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| T |
14826104 |
aaaggtttccgatgttgggaccctatatcccaatgcattcgtatttctcgtcatgttgtcttttgggaacacataatgttctcttctttgtcaaa |
14826198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 24432332 - 24432558
Alignment:
| Q |
1 |
aaaggttatcgatgttgggatccaatttctcaacgcattcgcacctcccgtcatgttgtcatttgggaacaaaaaatgttctcttccttgtcaaaatttg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||| |
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| T |
24432332 |
aaaggttatcgatgttgggatcccatttctcaacgcattcgcacctcccgtcatgttgtcttttgggaacataaaatgttctcttccttgtcaaattttg |
24432431 |
T |
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| Q |
101 |
tttcaattccgtccacttccactcctttatttactaaccctaatgttgactattttaatagtgacacatatgcaggttcttctagtgagctctcttcccc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24432432 |
tttcaattccgtccacttccactcctttatttactaaccctgatgttgactattttaatagtgacacatatgcaggttcttctagtgagctctcttcccc |
24432531 |
T |
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| Q |
201 |
ttccgatgttccatccacttcaaatga |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
24432532 |
ttccgatgttccatccacttcaaatga |
24432558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29991189 - 29991409
Alignment:
| Q |
1 |
aaaggttatcgatgttgggatccaatttctcaacgcattcgcacctcccgtcatgttgtcatttgggaacaaaaaatgttctcttccttgtcaaaatttg |
100 |
Q |
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|||||||||||||||||||||||||| || || |||||||||||||| ||||||||| || |||| ||||| | ||||||||||||||| ||||| ||| |
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| T |
29991189 |
aaaggttatcgatgttgggatccaatatcccagcgcattcgcacctctcgtcatgttatcttttgcgaacatataatgttctcttccttatcaaagttta |
29991288 |
T |
|
| Q |
101 |
tttcaattccgtccacttccactcctttatttactaaccctaatgttgactattttaatagtgacacatatgcaggttcttctagtgagctctcttcccc |
200 |
Q |
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|| || | || |||||||||||||| ||||| |||| |||||||| |||| |||| ||||| ||||||||| |||||||||||| | |||| |
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| T |
29991289 |
actcgatcctttctacttccactcctttctttacgaacctcgatgttgacctttttcctagtaacacacatgcaggtttttctagtgagcttccaacccc |
29991388 |
T |
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| Q |
201 |
ttccgatgttccatccacttc |
221 |
Q |
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||||||||||| ||||||||| |
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| T |
29991389 |
ttccgatgttcaatccacttc |
29991409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 16503228 - 16503368
Alignment:
| Q |
1 |
aaaggttatcgatgttgggatccaatttctcaacgcattcgcacctcccgtcatgttgtcatttgggaacaaaaaatgttctcttccttgtcaaaatttg |
100 |
Q |
| |
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|||||| ||||||||||||| || || |||||||||||||| ||| | ||||||||| |||||||||| | ||||||||||||||||||||| ||| |
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| T |
16503228 |
aaaggtcatcgatgttgggacccgatatctcaacgcattcgtgtctctcaacatgttgtcttttgggaacatataatgttctcttccttgtcaaagttta |
16503327 |
T |
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| Q |
101 |
tttcaattccgtccacttccactcctttatttactaaccct |
141 |
Q |
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||||||||||| ||||| |||||| | |||||||||||| |
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| T |
16503328 |
agtcaattccgtctacttcgactcctctctttactaaccct |
16503368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 53016985 - 53016806
Alignment:
| Q |
1 |
aaaggttatcgatgttgggatccaatttctcaacgcattcgcacctcccgtcatgttgtcatttgggaacaaaaaatgttctcttccttgtcaaaatttg |
100 |
Q |
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||||| |||||||||| ||||||||| || ||||||||| ||| ||| || ||||||||| |||||||||| | ||||||||||||||||||||| ||| |
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| T |
53016985 |
aaaggctatcgatgttaggatccaatatcccaacgcatt-gcatctctcgccatgttgtcttttgggaacatataatgttctcttccttgtcaaagttta |
53016887 |
T |
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| Q |
101 |
tttcaattccgtccacttccactcctttatttactaaccctaatgttgactattttaatagtgacacatatgcaggttctt |
181 |
Q |
| |
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||||| ||||| |||||||||||| | |||||||||||| |||||||| |||| |||||||||| |||||||||||| |
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| T |
53016886 |
agtcaatcccgtctacttccactcctctctttactaaccctgatgttgacctttttcctagtgacacacatgcaggttctt |
53016806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 20669915 - 20669736
Alignment:
| Q |
1 |
aaaggttatcgatgttgggatccaatttctcaacgcattcgcacctcccgtcatgttgtcatttgggaacaaaaaatgttctcttccttgtcaaaatttg |
100 |
Q |
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|||||||||| ||||| ||||||||| ||||| |||||||||| ||| |||||||||||| |||||||||| | ||||||||||||||| ||||| ||| |
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| T |
20669915 |
aaaggttatcaatgttaggatccaatatctcagcgcattcgcatctctcgtcatgttgtcttttgggaacatataatgttctcttccttatcaaagttta |
20669816 |
T |
|
| Q |
101 |
tttcaattccgtccacttccactcctttatttactaaccctaatgttgactattttaatagtgacacatatgcaggttct |
180 |
Q |
| |
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||||| ||||| || | |||||| | |||||||||||| |||| || | |||| |||||||| | ||||||||||| |
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| T |
20669815 |
agtcaatcccgtctacctatactcctctctttactaaccctgatgtcgatttttttcctagtgacaaacatgcaggttct |
20669736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 52 - 178
Target Start/End: Original strand, 12546378 - 12546504
Alignment:
| Q |
52 |
catgttgtcatttgggaacaaaaaatgttctcttccttgtcaaaatttgtttcaattccgtccacttccactcctttatttactaaccctaatgttgact |
151 |
Q |
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||||||||| ||||| |||| | |||||| |||||||||||||| ||| |||||||| || |||||||||||| | ||||||||||| |||| | || |
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| T |
12546378 |
catgttgtcttttggaaacatataatgttttcttccttgtcaaagtttaagtcaattccctcaacttccactcctctttttactaaccccgatgtcggct |
12546477 |
T |
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| Q |
152 |
attttaatagtgacacatatgcaggtt |
178 |
Q |
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||||| ||||||||| |||||||||| |
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| T |
12546478 |
attttcctagtgacacgtatgcaggtt |
12546504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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