View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_366 (Length: 226)
Name: NF8912A_low_366
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_366 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0591 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 49106477 - 49106261
Alignment:
| Q |
10 |
cagagaataatgctgcttggaagtttgcggcccaatcagatgttctaatgatgactcaaagtccaggagggaaagaacgtactgagcaagaattcatgga |
109 |
Q |
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| T |
49106477 |
cagagaataatgctgcttggaagtttgcggcccaatcagatgttctaatgatgactcaaagtccaggagggaaagaacgtactgagcaagaattcatgga |
49106378 |
T |
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| Q |
110 |
tttagcaaatggagctggatttagtggcattagatatgaatgttatgtccatactttttgggttatggagttcttaaagtagatatcataccctcctgtg |
209 |
Q |
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| T |
49106377 |
tttagcaaatggagctggatttagtggcattagatatgaatgttatgtccatactttttgggttatggagttcttcaagtagatatcataccctcctgtg |
49106278 |
T |
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| Q |
210 |
ttctgctcattgggatt |
226 |
Q |
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| T |
49106277 |
ttctgctcattgcgatt |
49106261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 49097971 - 49097884
Alignment:
| Q |
48 |
gatgttctaatgatgactcaaagtccaggagggaaagaacgtactgagcaagaattcatggatttagcaaatggagctggatttagtg |
135 |
Q |
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| T |
49097971 |
gatgttttaatgatgactcaaaatccaggaggaaaagagcgaactgagcatgaattcaaggaattggctaaaggatctggatttagtg |
49097884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 8419 - 8560
Alignment:
| Q |
48 |
gatgttctaatgatgactcaaagtccaggagggaaagaacgtactgagcaagaattcatggatttagcaaatggagctggatttagtggcattagatatg |
147 |
Q |
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| T |
8419 |
gatgttctgatgatgactcaaagtccaggaggaaaagaacgaactaagcaagagttcattgatttggcaactagagttggatttattggcataagatgtg |
8518 |
T |
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| Q |
148 |
aatgttatgtccatactttttgggttatggagttcttaaagt |
189 |
Q |
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| T |
8519 |
aatgttgtgttcgtaacttttgggttatggagttctttaagt |
8560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 190
Target Start/End: Complemental strand, 28723475 - 28723325
Alignment:
| Q |
40 |
cccaatcagatgttctaatgatgactcaaagtccaggagggaaagaacgtactgagcaagaattcatggatttagcaaatggagctggatttagtggcat |
139 |
Q |
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| T |
28723475 |
cccaattagatgttctgatgatgactatgaacccaggaggaaaagagagaactaagcaagaattcatggatttggcaactaaagttggatttagtggcat |
28723376 |
T |
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| Q |
140 |
tagatatgaatgttatgtccatactttttgggttatggagttcttaaagta |
190 |
Q |
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| T |
28723375 |
cagatatgaatgttgtgtctgtaatttttgggttatggagttctttaagta |
28723325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 190
Target Start/End: Complemental strand, 28731117 - 28730967
Alignment:
| Q |
40 |
cccaatcagatgttctaatgatgactcaaagtccaggagggaaagaacgtactgagcaagaattcatggatttagcaaatggagctggatttagtggcat |
139 |
Q |
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| T |
28731117 |
cccaattagatgttctgatgatgactatgaacccaggaggaaaagagagaactaagcaagaattcatggatttggcaactaaagttggatttagtggcat |
28731018 |
T |
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| Q |
140 |
tagatatgaatgttatgtccatactttttgggttatggagttcttaaagta |
190 |
Q |
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| T |
28731017 |
cagatatgaatgttgtgtctgtaatttttgggttatggagttctttaagta |
28730967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 40 - 190
Target Start/End: Complemental strand, 28708116 - 28707966
Alignment:
| Q |
40 |
cccaatcagatgttctaatgatgactcaaagtccaggagggaaagaacgtactgagcaagaattcatggatttagcaaatggagctggatttagtggcat |
139 |
Q |
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| T |
28708116 |
cccaattagatgttctgatgatgactcaatacccaggaggaaaagagagaaataagcaagaattcatggatttggcaactaaagttggatttagtggcat |
28708017 |
T |
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| Q |
140 |
tagatatgaatgttatgtccatactttttgggttatggagttcttaaagta |
190 |
Q |
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| T |
28708016 |
cagatatgaatgtcgtgtctgtaatttctgggttatggagttctttaagta |
28707966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 28628208 - 28628067
Alignment:
| Q |
48 |
gatgttctaatgatgactcaaagtccaggagggaaagaacgtactgagcaagaattcatggatttagcaaatggagctggatttagtggcattagatatg |
147 |
Q |
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|||||||| ||||||||||||| ||||||||| |||||||| ||| || |||| ||||| ||||| |||| | ||| ||||||||| ||||| |||| || |
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| T |
28628208 |
gatgttctgatgatgactcaaaatccaggaggaaaagaacgaactaagaaagagttcattgatttggcaactagagttggatttagaggcataagatgtg |
28628109 |
T |
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| Q |
148 |
aatgttatgtccatactttttgggttatggagttcttaaagt |
189 |
Q |
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|||| | ||| | || |||||||||||||||||||| |||| |
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| T |
28628108 |
aatgctgtgttcgtaacttttgggttatggagttctttaagt |
28628067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 28623821 - 28623725
Alignment:
| Q |
94 |
agcaagaattcatggatttagcaaatggagctggatttagtggcattagatatgaatgttatgtccatactttttgggttatggagttcttaaagta |
190 |
Q |
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||||||||||||| ||||| |||| | ||| ||||||||| ||||| ||||||||||||| ||| | || || ||||||||||||||||| ||||| |
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| T |
28623821 |
agcaagaattcattgatttggcaactagagttggatttagaggcataagatatgaatgttgtgttcgtaacttatgggttatggagttctttaagta |
28623725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 190
Target Start/End: Complemental strand, 28695531 - 28695383
Alignment:
| Q |
42 |
caatcagatgttctaatgatgactcaaagtccaggagggaaagaacgtactgagcaagaattcatggatttagcaaatggagctggatttagtggcatta |
141 |
Q |
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|||| ||||||||| ||||||||||||| | |||||| ||||| | ||| |||||||||| | ||||| |||| | ||||||||||||| ||||| | |
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| T |
28695531 |
caattagatgttctgatgatgactcaaaccctaggaggaaaagagagaactaagcaagaatttcttgatttggcaactagagctggatttagaggcatca |
28695432 |
T |
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| Q |
142 |
gatatgaatgttatgtccatactttttgggttatggagttcttaaagta |
190 |
Q |
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| T |
28695431 |
attatgaatgttgtgttcgtaacaaatgggttatggagttctttaagta |
28695383 |
T |
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