View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8912A_low_370 (Length: 226)
Name: NF8912A_low_370
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_370 |
 | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 34293110 - 34293321
Alignment:
| Q |
1 |
tcaataatgcctttttacaaggaaaattaactgaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34293110 |
tcaataatgcctttttacaaggaaaattaactgaagatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaact |
34293209 |
T |
|
| Q |
101 |
taagaaagctatatatggtttgagacaaacacctcgcgcgtggcatgattctttcaaggcattcgttctctctgttgggttttgtacaagcctaagtgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34293210 |
taagaaagctatatatggtttgagacaagcacctcgcgcgtggcatgattctctcaaggcattcgttctctttgttgggttttgtacaagcctaagtgat |
34293309 |
T |
|
| Q |
201 |
ccatctctgttt |
212 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
34293310 |
ccatctttgttt |
34293321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 24486774 - 24486563
Alignment:
| Q |
1 |
tcaataatgcctttttacaaggaaaattaactgaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
24486774 |
tcaataatgcctttttacaaggaaaattaactgaagatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaagct |
24486675 |
T |
|
| Q |
101 |
taagaaagctatatatggtttgagacaaacacctcgcgcgtggcatgattctttcaaggcattcgttctctctgttgggttttgtacaagcctaagtgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24486674 |
taagaaagctatatatggtttgagacaagcacctcgcgcgtggcatgattctctcaaggcattcgttctctctgttgggttttgtacaagcctaagtgat |
24486575 |
T |
|
| Q |
201 |
ccatctctgttt |
212 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
24486574 |
ccatctttgttt |
24486563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 24495108 - 24494897
Alignment:
| Q |
1 |
tcaataatgcctttttacaaggaaaattaactgaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24495108 |
tcaataatgcctttttacaaggaaaattaactgaagatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaact |
24495009 |
T |
|
| Q |
101 |
taagaaagctatatatggtttgagacaaacacctcgcgcgtggcatgattctttcaaggcattcgttctctctgttgggttttgtacaagcctaagtgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24495008 |
taagaaagctatatatggtttgagacaagcacctcgcgcgtggcatgattctctcaaggcattcgttctctatgttgggttttgtacaagcctaagtgat |
24494909 |
T |
|
| Q |
201 |
ccatctctgttt |
212 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
24494908 |
ccatctttgttt |
24494897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 59182 - 59037
Alignment:
| Q |
6 |
aatgcctttttacaaggaaaattaactgaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaacttaaga |
105 |
Q |
| |
|
|||||||| || |||||||||||| ||||| |||| || |||||||| || ||||| || || || |||||| |||| || ||| |||| || || |||| |
|
|
| T |
59182 |
aatgccttcttgcaaggaaaattatctgaagatgtgtatatgcagcagcccccaggttttatccattctgaatttcctcatcatatttgtaagctcaaga |
59083 |
T |
|
| Q |
106 |
aagctatatatggtttgagacaaacacctcgcgcgtggcatgattc |
151 |
Q |
| |
|
|||| || ||||||||| | || ||||||| || ||||||||||| |
|
|
| T |
59082 |
aagcaatttatggtttgtggcaggcacctcgtgcatggcatgattc |
59037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 81949 - 81833
Alignment:
| Q |
33 |
gaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaacttaagaaagctatatatggtttgagacaaacac |
132 |
Q |
| |
|
|||||||| | |||| | ||||| || || |||||||| |||||| |||| | |||||||||||||| ||||| ||||||||||| || || || || | |
|
|
| T |
81949 |
gaaaatgttttcatggaacaaccacctggtttcattcattctgaatttcctaatcatgtttgcaaactcaagaaggctatatatggattaaggcagactc |
81850 |
T |
|
| Q |
133 |
ctcgcgcgtggcatgat |
149 |
Q |
| |
|
|||| || ||||||||| |
|
|
| T |
81849 |
ctcgagcatggcatgat |
81833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 32323741 - 32323656
Alignment:
| Q |
33 |
gaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaacttaagaaagctatatatgg |
118 |
Q |
| |
|
|||||||| | |||| | ||||| || || |||||||| |||||| |||| | |||||||||||||| ||||| ||||||||||| |
|
|
| T |
32323741 |
gaaaatgttttcatggaacaaccacctggtttcattcattctgaatttcctaatcatgtttgcaaactcaagaaggctatatatgg |
32323656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 18728777 - 18728692
Alignment:
| Q |
33 |
gaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaacttaagaaagctatatatgg |
118 |
Q |
| |
|
|||||||| | |||| | ||||| || || |||||||| |||||| |||| | |||||||||||||| ||||| ||||||||||| |
|
|
| T |
18728777 |
gaaaatgttttcatggaacaaccacctggtttcattcattctgaatttcctaatcatgtttgcaaactcaagaaggctatatatgg |
18728692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University