View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_372 (Length: 225)
Name: NF8912A_low_372
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_372 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 12981 - 12796
Alignment:
| Q |
27 |
cgaagaatatctaacatgacttagtctctctctcaacgaattaaaataaaccaattttccccnnnnnnn--gtccattcttcaaaacaaaatcttaatcg |
124 |
Q |
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| T |
12981 |
cgaataatatctgacatgacttggtctctctctcaacgaattaaaataaaccaattttccccaaaaaaaaagtccatttttcaaaacaaaatcttaatcg |
12882 |
T |
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| Q |
125 |
tattcacaatagtgatgttgaaactagacaattttgtatggagatgaatcttttagatatactagtgcacttgttagtatgatgtc |
210 |
Q |
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| T |
12881 |
tattcacaatagtgatgttcaaactagacaattttgtatggagatgaaccttttagatatactagtgcacttgttagtatgatgtc |
12796 |
T |
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Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 16424269 - 16424084
Alignment:
| Q |
27 |
cgaagaatatctaacatgacttagtctctctctcaacgaattaaaataaaccaattttccccnnnnnnn--gtccattcttcaaaacaaaatcttaatcg |
124 |
Q |
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| T |
16424269 |
cgaataatatctgacatgacttggtctctctctcaacgaattaaaataaaccaattttccccaaaaaaaaagtccatttttcaaaacaaaatcttaatcg |
16424170 |
T |
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| Q |
125 |
tattcacaatagtgatgttgaaactagacaattttgtatggagatgaatcttttagatatactagtgcacttgttagtatgatgtc |
210 |
Q |
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| T |
16424169 |
tattcacaatagtgatgttcaaactagacaattttgtatggagatgaaccttttagatatactagtgcacttgttagtatgatgtc |
16424084 |
T |
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