View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_377 (Length: 223)
Name: NF8912A_low_377
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_377 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 20816835 - 20816678
Alignment:
| Q |
24 |
agtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtccataaagtcaaaatgcactaaatcgtctatacccaatttcttcaaagt |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
20816835 |
agtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtccataaagtcaaaatgtactaaatcgtctatacccaatttcttcaaagt |
20816736 |
T |
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| Q |
124 |
aagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaaga |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816735 |
aagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaaga |
20816678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 206
Target Start/End: Complemental strand, 48669272 - 48669242
Alignment:
| Q |
176 |
tgaagaaaatccggtaaccgtctccgaacac |
206 |
Q |
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| T |
48669272 |
tgaagaaaatccggtaaccgtctccgaacac |
48669242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 33388269 - 33388426
Alignment:
| Q |
24 |
agtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtccataaagtcaaaatgcactaaatcgtctatacccaatttcttcaaagt |
123 |
Q |
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|||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| || |
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| T |
33388269 |
agtaattcaacacttccaaagcacgcattaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttcttcaatgt |
33388368 |
T |
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| Q |
124 |
aagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaaga |
181 |
Q |
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|||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388369 |
aagaaccgtgtttgcaagattagatctcaaaatttcaggataggtctgcggctgaaga |
33388426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 38779310 - 38779467
Alignment:
| Q |
24 |
agtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtccataaagtcaaaatgcactaaatcgtctatacccaatttcttcaaagt |
123 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||| || |||||||||||||| ||||||||||| |||||||| |||||||||| ||||||||| || |
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| T |
38779310 |
agtaattcaacacttccaaagcacgcatcaaggtttcaggggcaggagggtccatgaagtcaaaatgaactaaatcatctatacccagtttcttcaatgt |
38779409 |
T |
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| Q |
124 |
aagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaaga |
181 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38779410 |
aagaactgtgttggcaagattagatctcaaaatttcaggataggtctgcggctgaaga |
38779467 |
T |
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