View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912A_low_38 (Length: 406)

Name: NF8912A_low_38
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8912A_low_38
NF8912A_low_38
[»] chr1 (1 HSPs)
chr1 (18-389)||(34900536-34900908)
[»] chr2 (4 HSPs)
chr2 (243-341)||(26894639-26894737)
chr2 (243-341)||(26900078-26900176)
chr2 (243-341)||(4405789-4405887)
chr2 (125-179)||(20023954-20024008)
[»] scaffold0012 (1 HSPs)
scaffold0012 (261-366)||(183182-183286)
[»] chr6 (1 HSPs)
chr6 (243-341)||(9814699-9814797)
[»] chr7 (3 HSPs)
chr7 (291-342)||(29467354-29467405)
chr7 (285-347)||(30944960-30945022)
chr7 (285-341)||(30943933-30943989)


Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 34900908 - 34900536
Alignment:
Q  18 catcaccattagctagaagagaaccacacaaaggcacaaacatctatttaattcacaatc-gttgtatatttgaaaacttataaagtttgtaaaagttgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34900908 catcaccattagctagaagagaaccacacaaaggcacaaacatttatttaattcacaatcagttgtatatttgaaaacttataaagtttgtaaaagttgt 34900809  T
Q  117 caattaaataaaaatatttcaaaagaaattccaacgttgtaagggggtggaatcaaaaataacttttttaaaataaagtgtagaaaaaactcaatttaac 216  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  34900808 caattaaataaaaatatttcaaaagaaattcgaacgttgtaaggaggtggaatcaaaaataacttttttaaaataaagtgtagaaaaaactcaatttagt 34900709  T
Q  217 aatataatcataaccagtgaggcgaaaactagttccatttcatcgatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacat 316  Q
    |||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  34900708 aatataatcataacgagtgaggcgagaactagttccatttcattgatagctcttttcttctaagagctgtctttcccttagtggtggcttcatctaacat 34900609  T
Q  317 ataactcttttctctcgattcaaaaacaaaaacataagatatttctcaattaaggagtttacatccctttgat 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34900608 ataactcttttctctcgattcaaaaacaaaaacataagatatttctcaattaaggagtttacatctctttgat 34900536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 341
Target Start/End: Original strand, 26894639 - 26894737
Alignment:
Q  243 aactagttccatttcatcgatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa 341  Q
    |||||| ||||| || | ||||||||||| || |||||||  | ||| | ||||||||| ||||||||||||| |||||||||||||||||| ||||||    
T  26894639 aactagctccatctcgttgatagctctttcctgctaagagtggcctttctcttagtggtagcttcatctaacagataactcttttctctcgactcaaaa 26894737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 341
Target Start/End: Original strand, 26900078 - 26900176
Alignment:
Q  243 aactagttccatttcatcgatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa 341  Q
    |||||| ||||| || | ||||||||||| || |||||||  | ||| | ||||||||| ||||||||||||| |||||||||||||||||| ||||||    
T  26900078 aactagctccatctcgttgatagctctttcctgctaagagtggcctttctcttagtggtagcttcatctaacagataactcttttctctcgactcaaaa 26900176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 243 - 341
Target Start/End: Complemental strand, 4405887 - 4405789
Alignment:
Q  243 aactagttccatttcatcgatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa 341  Q
    |||||| ||||| || | ||||||||||| || |||||||  | ||| ||||||||||| ||||||||||||  ||| |||||||||||||| ||||||    
T  4405887 aactagctccatctcgttgatagctctttcctactaagagtggcctttcccttagtggtagcttcatctaacggatagctcttttctctcgactcaaaa 4405789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 20023954 - 20024008
Alignment:
Q  125 taaaaatatttcaaaagaaattccaacgttgtaagggggtggaatcaaaaataac 179  Q
    |||||||||||||||||||| || |||||||||| | | |||||||| |||||||    
T  20023954 taaaaatatttcaaaagaaaatcaaacgttgtaaagagatggaatcagaaataac 20024008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 366
Target Start/End: Original strand, 183182 - 183286
Alignment:
Q  261 gatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaaacaaaaacataagatattt 360  Q
    ||||||||||||||||||||||    ||| || |||||||| ||| || |||||| |||||||||||||||||| || ||||||||||| ||| ||||||    
T  183182 gatagctcttttctcctaagagtgacctttcctttagtggtagctccacctaacaaataactcttttctctcgactc-aaaacaaaaacgtaaaatattt 183280  T
Q  361 ctcaat 366  Q
     |||||    
T  183281 ttcaat 183286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 341
Target Start/End: Complemental strand, 9814797 - 9814699
Alignment:
Q  243 aactagttccatttcatcgatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa 341  Q
    |||||| ||||| || | ||||||||||| || |||||||  | ||| | ||||||||| ||||||||||||  ||| |||||||||||||| ||||||    
T  9814797 aactagctccatctcgttgatagctctttcctactaagagtggcctttctcttagtggtagcttcatctaacggatagctcttttctctcgactcaaaa 9814699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 29467354 - 29467405
Alignment:
Q  291 cccttagtggtggcttcatctaacatataactcttttctctcgattcaaaaa 342  Q
    ||||||||||| | ||||||||||| ||| |||||||||||||| |||||||    
T  29467354 cccttagtggtagattcatctaacagatatctcttttctctcgactcaaaaa 29467405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 347
Target Start/End: Complemental strand, 30945022 - 30944960
Alignment:
Q  285 gtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaaacaaaa 347  Q
    ||||| ||||||||||| ||| ||||||||| ||| |||||||||||||| | ||||| ||||    
T  30945022 gtctttcccttagtggtagctccatctaacagatagctcttttctctcgactaaaaaaaaaaa 30944960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 30943989 - 30943933
Alignment:
Q  285 gtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa 341  Q
    ||||| ||||||||||| ||| ||||||||  ||| |||||||||||||| ||||||    
T  30943989 gtctttcccttagtggtagctccatctaacggatagctcttttctctcgactcaaaa 30943933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University