View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_383 (Length: 221)
Name: NF8912A_low_383
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_383 |
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| [»] chr8 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 8946988 - 8947192
Alignment:
| Q |
17 |
tgttgcaaaatgatgaattgttggtatttgcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcact |
116 |
Q |
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| T |
8946988 |
tgttgcaaaatgatgaattgttgctattttcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcact |
8947087 |
T |
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| Q |
117 |
ttcgggccaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgt |
216 |
Q |
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| T |
8947088 |
ctcgggccaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgt |
8947187 |
T |
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| Q |
217 |
ggtga |
221 |
Q |
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||||| |
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| T |
8947188 |
ggtga |
8947192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 8973507 - 8973303
Alignment:
| Q |
17 |
tgttgcaaaatgatgaattgttggtatttgcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcact |
116 |
Q |
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| T |
8973507 |
tgttgcaaaaagatgaattgttggtattttcaaattgacataattgccctttccattttgaaggaatttgaggcatgtcattatctttgaaactttcact |
8973408 |
T |
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| Q |
117 |
ttcgggccaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgt |
216 |
Q |
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| T |
8973407 |
ttctggccaaacaccggtatcaatcataccaacaatgacatctttgccataatcagaagctggccatgcccctttgtatgaattaaggccaaggaattgt |
8973308 |
T |
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| Q |
217 |
ggtga |
221 |
Q |
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| T |
8973307 |
ggtga |
8973303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 8962105 - 8961901
Alignment:
| Q |
17 |
tgttgcaaaatgatgaattgttggtatttgcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcact |
116 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||| | |||||||||||| ||||||||||| |
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| T |
8962105 |
tgttgcaaaaagatgaattgttggtattttcaaattgacataatttccctttccattttgaaggaattttagtaaatccattatcattgaaactttcact |
8962006 |
T |
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| Q |
117 |
ttcgggccaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgt |
216 |
Q |
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| T |
8962005 |
ttctggccaaacaccggtatcaatcacaccaacaatgacatcttttccataatcagaagctagccacacccctttgtagggattaagaccaaggaattga |
8961906 |
T |
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| Q |
217 |
ggtga |
221 |
Q |
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| T |
8961905 |
ggtga |
8961901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 21688169 - 21688343
Alignment:
| Q |
47 |
caaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgagtcaatcaaacc |
146 |
Q |
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| T |
21688169 |
caaattgacataattggcctttccattttgagggtattttagtcattccatcatctctaaaactttcactttctggccaaacaccagtgtctattacacc |
21688268 |
T |
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| Q |
147 |
aataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtga |
221 |
Q |
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| T |
21688269 |
aacaatgatatctttaccaaaatcagaagttggccatgcccctctatatggattaaggccaagaaattgaggtga |
21688343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 34963779 - 34963857
Alignment:
| Q |
64 |
cctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgagtcaatca |
142 |
Q |
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| T |
34963779 |
cctttccattttgaaggaattttagtcattccatcatctttgaagctctcactttctggccaaactcctgtgtcaatca |
34963857 |
T |
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