View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_386 (Length: 221)
Name: NF8912A_low_386
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_386 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0079 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 183256 - 183061
Alignment:
| Q |
13 |
acaacactctctagggaactcggtaaaatggccccgtaaattcgggagaatgggtgctgtctatcgaagggggtcgcagtgaccaggcccgggcgactgt |
112 |
Q |
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||||| ||||||| ||||||||| ||||| ||||||||| |||||||||| |||||| || | |||||||||||||||||||||||||||||||||| |
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| T |
183256 |
acaactctctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgt |
183157 |
T |
|
| Q |
113 |
ttaccaaaaacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183156 |
ttaccaaaaacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
183061 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 494260 - 494455
Alignment:
| Q |
13 |
acaacactctctagggaactcggtaaaatggccccgtaaattcgggagaatgggtgctgtctatcgaagggggtcgcagtgaccaggcccgggcgactgt |
112 |
Q |
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||||| ||||||| ||||||||| ||||| ||||||||| |||||||||| |||||| || | |||||||||||||||||||||||||||||||||| |
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| T |
494260 |
acaactctctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgt |
494359 |
T |
|
| Q |
113 |
ttaccaaaaacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
494360 |
ttaccaaaaacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
494455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 18191922 - 18192117
Alignment:
| Q |
13 |
acaacactctctagggaactcggtaaaatggccccgtaaattcgggagaatgggtgctgtctatcgaagggggtcgcagtgaccaggcccgggcgactgt |
112 |
Q |
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||||| ||||||| ||||||||| ||||| ||||||||| |||||||||| |||||| || | |||||||||||||||||||||||||||||||||| |
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| T |
18191922 |
acaactctctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgt |
18192021 |
T |
|
| Q |
113 |
ttaccaaaaacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18192022 |
ttaccaaaaacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
18192117 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 82 - 202
Target Start/End: Original strand, 50525862 - 50525982
Alignment:
| Q |
82 |
ggggtcgcagtgaccaggcccgggcgactgtttaccaaaaacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccgg |
181 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
50525862 |
ggggtcgcagtgaccaggcccgggcgactgtttatcaaaaacacaggtcttcgcaaagtcgtaagaccatgtatgggggctgacgtctgtccagtgccgg |
50525961 |
T |
|
| Q |
182 |
aaggttaaggaagttggtgac |
202 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
50525962 |
aaggttaaggaagttggtgac |
50525982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 16337426 - 16337238
Alignment:
| Q |
20 |
tctctagggaactcggtaaaatggccccgtaaattcgggagaatgggtgctgtctatcgaagggggtcgcagtgaccaggcccgggcgactgtttaccaa |
119 |
Q |
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|||||| ||||||||| ||| | ||| |||| |||||||||| |||||| || | |||||||||||||||||||||| | ||||||||| ||| |
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| T |
16337426 |
tctctaaggaactcggcaaactagccatgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcttaagtgactgtttatcaa |
16337327 |
T |
|
| Q |
120 |
aaacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
208 |
Q |
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||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16337326 |
aaatacaggtctctgcaaagtagtaagaccatgtatgggggttgacgcctgcccagtgcaggaaggttaaggaagttggtgacctgatg |
16337238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 29443302 - 29443344
Alignment:
| Q |
166 |
gcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
208 |
Q |
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| T |
29443302 |
gcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
29443344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 14404789 - 14404984
Alignment:
| Q |
13 |
acaacactctctagggaactcggtaaaatggccccgtaaattcgggagaatgggtgctgtctatcgaagggggtcgcagtgaccaggcccgggcgactgt |
112 |
Q |
| |
|
||||| ||||||| ||||||||| ||||| ||||||||| |||||||||| |||||| || | |||||||||||||||||||||||||||||||||| |
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| T |
14404789 |
acaactctctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgt |
14404888 |
T |
|
| Q |
113 |
ttaccaaaaacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
208 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14404889 |
ttaccaaaaacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgtctgcccagtgccggaaggttaaggaagttggtgacctgatg |
14404984 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 34659259 - 34659454
Alignment:
| Q |
13 |
acaacactctctagggaactcggtaaaatggccccgtaaattcgggagaatgggtgctgtctatcgaagggggtcgcagtgaccaggcccgggcgactgt |
112 |
Q |
| |
|
||||| ||||||| |||||| || ||||| ||||||||| |||||||||| |||||| || | |||||||||||||||||||||||| ||||||||| |
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|
| T |
34659259 |
acaactctctctaaggaacttggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggccctggcgactgt |
34659358 |
T |
|
| Q |
113 |
ttaccaaaaacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
208 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
34659359 |
ttaccaaaagcacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcctagtgccggaaggttaaggaagttggtgacccgatg |
34659454 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 55434 - 55622
Alignment:
| Q |
20 |
tctctagggaactcggtaaaatggccccgtaaattcgggagaatgggtgctgtctatcgaagggggtcgcagtgaccaggcccgggcgactgtttaccaa |
119 |
Q |
| |
|
|||||| ||||||||| ||| | ||| |||| |||||||||| |||||| || | |||||||||||||||||||||| | ||||||||| ||| |
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|
| T |
55434 |
tctctaaggaactcggcaaactagccatgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcttaagtgactgtttatcaa |
55533 |
T |
|
| Q |
120 |
aaacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
208 |
Q |
| |
|
||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
55534 |
aaatacaggtctctgcaaagtagtaagaccatgtatgggggttgacgcctgcccagtgcaggaaggttaaggaagttggtgacctgatg |
55622 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 7869275 - 7869234
Alignment:
| Q |
88 |
gcagtgaccaggcccgggcgactgtttaccaaaaacacaggtc |
130 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
7869275 |
gcagtgaccaggtccgggcgactgtttacc-aaaacacaggtc |
7869234 |
T |
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