View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_388 (Length: 220)
Name: NF8912A_low_388
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_388 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 31658747 - 31658966
Alignment:
| Q |
1 |
gaggttatctgatgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaatggtgat |
100 |
Q |
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| T |
31658747 |
gaggttatctgatgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctcttttgtagatgcaagaaatggcaatggtgat |
31658846 |
T |
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| Q |
101 |
ggtggaaacgagttttcttctttaattggaatgttgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctg |
200 |
Q |
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| T |
31658847 |
ggtggaaacgagttttcttctttaattggaatgttgttatcaaaactaagtaatatagaagagtcatttgatgacaaaatggattccaaatttatatctg |
31658946 |
T |
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| Q |
201 |
aatgcaaataacttttgcaa |
220 |
Q |
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| T |
31658947 |
aatgcaaataacttttgcaa |
31658966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 31650457 - 31650298
Alignment:
| Q |
13 |
tgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaat---ggtgatggtggaaac |
109 |
Q |
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| T |
31650457 |
tgagaacaattggttttgaggaaaatgatcatgatgtatctcttccttgggatctccttttgtagatgcaagaagtggcaatggtggtgatggtcgaaat |
31650358 |
T |
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| Q |
110 |
gagttttcttctttaattggaatgttg---ttatcaaaactgagtaatatagaagagtca |
166 |
Q |
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| T |
31650357 |
ggatattcttgtttatttgaaatgttgttattatcgaaactaagtaatattgaagagtca |
31650298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 31657342 - 31657268
Alignment:
| Q |
130 |
aatgttgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctgaatg |
204 |
Q |
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| T |
31657342 |
aatgttgttatcgaaactaagtaatatagaagagtcatcgtagcacaaaatggattccaattttatgtctgaatg |
31657268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 31657434 - 31657390
Alignment:
| Q |
50 |
atctcttccttaggatcctctattgtagatgcaagaaatggcaat |
94 |
Q |
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| T |
31657434 |
atctcttccttgggttcctcttttgtagatgcaagaagtggcaat |
31657390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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