View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_393 (Length: 218)
Name: NF8912A_low_393
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_393 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 37704649 - 37704455
Alignment:
| Q |
24 |
taattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgt |
123 |
Q |
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| T |
37704649 |
taattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgt |
37704550 |
T |
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| Q |
124 |
catatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttgg |
218 |
Q |
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| T |
37704549 |
catatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttgg |
37704455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 37699171 - 37698974
Alignment:
| Q |
24 |
taattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatg |
122 |
Q |
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| T |
37699171 |
taattacgttcgaaaagtcttggttttccaagatgttatttagtttaatgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatg |
37699072 |
T |
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| Q |
123 |
tcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg |
218 |
Q |
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| T |
37699071 |
tcatatcagtatacggttatgaaaagcacccccaacacaaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg |
37698974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 37437715 - 37437521
Alignment:
| Q |
24 |
taattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatg |
122 |
Q |
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| T |
37437715 |
taattacgttcgaaaagtcttggtcttccaatatgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatattgttgccaattg |
37437616 |
T |
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| Q |
123 |
tcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttgg |
218 |
Q |
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| T |
37437615 |
tcatatcactatacggttatgaaaagca-ccccacattaaaacaagggaatagctagactgaatttgtaaacaatctaataagtcagactttttgg |
37437521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 37698697 - 37698637
Alignment:
| Q |
158 |
aacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttgg |
218 |
Q |
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| T |
37698697 |
aacaaaataagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttgg |
37698637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 37698808 - 37698703
Alignment:
| Q |
23 |
ttaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaat |
121 |
Q |
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| T |
37698808 |
ttaattacgttaaaaaagtcttggtcttccaagatgttatttagtttaacgaacaccaaacttttgtatgattg--------ttaatattgttgccaatt |
37698717 |
T |
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| Q |
122 |
gtcatatcagtata |
135 |
Q |
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| T |
37698716 |
gtcatatcactata |
37698703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 16841041 - 16841109
Alignment:
| Q |
24 |
taattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatg |
91 |
Q |
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| T |
16841041 |
taattacgttcaaaaagtcttggtcttccaagattttatttagtttattaaacaccaaacttttgtatg |
16841109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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