View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8912A_low_402 (Length: 216)
Name: NF8912A_low_402
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_402 |
 | |
|
| [»] scaffold0108 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0319 (1 HSPs) |
| | |
|
| [»] scaffold0040 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0304 (2 HSPs) |
| | |
|
| [»] scaffold0282 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 41375532 - 41375346
Alignment:
| Q |
19 |
tcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattct |
118 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
41375532 |
tcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattct |
41375433 |
T |
|
| Q |
119 |
tcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat |
205 |
Q |
| |
|
||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
41375432 |
tcagcaagccttggacggtaggaatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatatgatgtccat |
41375346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 22081055 - 22081242
Alignment:
| Q |
18 |
atcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc |
117 |
Q |
| |
|
||||||||| ||| ||| |||||| || ||| ||| |||||||||||||||||||| |||||||| || ||||||||||| ||| ||||||| || ||| |
|
|
| T |
22081055 |
atcatgaaagagttcagcagtatcaggtgtgataccatcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaaccagcatccatggcgttc |
22081154 |
T |
|
| Q |
118 |
ttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat |
205 |
Q |
| |
|
|| | ||||||| ||| ||||||||||| |||||| |||| ||| || |||||||| || |||||||| || || |||||||||| |
|
|
| T |
22081155 |
ttaagaaaacctttgacggtaggaatgcatggctcaatatccaacataaattgggtacatctcaaaatgcaaaacatatgatgtccat |
22081242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 22799852 - 22799785
Alignment:
| Q |
49 |
acaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcatt |
116 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||||| || ||| ||||||||||| ||||||||||||| |
|
|
| T |
22799852 |
acaccatcaagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcatt |
22799785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 10787238 - 10787425
Alignment:
| Q |
18 |
atcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc |
117 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
10787238 |
atcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattc |
10787337 |
T |
|
| Q |
118 |
ttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat |
205 |
Q |
| |
|
| |||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
10787338 |
tgcaacaagccttggacggtaggaatgcagggctcagggtctagcatgaactgggtacacctcagaatgcagaacatgtgatgtccat |
10787425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 14688555 - 14688368
Alignment:
| Q |
18 |
atcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc |
117 |
Q |
| |
|
||||||||||||||||||||||||| || ||| ||||||||||||||||||||| || ||||| ||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
14688555 |
atcatgaaaaagtgtagcggtatcaggtgtgataccgtcaagcgccctcagcagcacgtcgaaatacagggcggtcacagagccagcatccatggcattc |
14688456 |
T |
|
| Q |
118 |
ttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat |
205 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
14688455 |
ttcaacaaaccttggatggtagggatgcagggctcagggtccagcatgaactgggtgcacctcaaaatgcagaacatgtgatgtccat |
14688368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 7360557 - 7360370
Alignment:
| Q |
18 |
atcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc |
117 |
Q |
| |
|
|||||||||||||| ||||| |||| || |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||| |
|
|
| T |
7360557 |
atcatgaaaaagtgcagcggcatcaggtgtgacaccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcatccatggcattc |
7360458 |
T |
|
| Q |
118 |
ttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat |
205 |
Q |
| |
|
||||| |||||||||| ||||| | |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
7360457 |
ttcaagaaaccttggatggtagggacgcagggctcaggatccagcatgaactgggtacacctcaaaatgcagaacatgtggtgtccat |
7360370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 153
Target Start/End: Original strand, 10158052 - 10158154
Alignment:
| Q |
51 |
accgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggc |
150 |
Q |
| |
|
||||||||||||||||| || |||||| ||||| || ||| |||| |||||| |||||||||||||||| | | || | ||||||||||||||| ||| |
|
|
| T |
10158052 |
accgtcaagcgccctcaacattacatcaaagtaaagcgcgctcacggagccatcatccatagcattcttgagcgaatacttgacagtaggaatgcatggc |
10158151 |
T |
|
| Q |
151 |
tca |
153 |
Q |
| |
|
||| |
|
|
| T |
10158152 |
tca |
10158154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 1730056 - 1730243
Alignment:
| Q |
18 |
atcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc |
117 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
1730056 |
atcatgaaaaagtctagcggaatcaagtctgacatcgttaagcaccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattc |
1730155 |
T |
|
| Q |
118 |
ttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat |
205 |
Q |
| |
|
|||| |||||||||||| |||||||| ||||||||||||| |||||||||||| |||||||| ||||||||||| || |||||||||| |
|
|
| T |
1730156 |
ttcagcaaaccttggacggtaggaatacagggctcagggtacagcatgaactgagtacacctcaaaatgcagaacatatgatgtccat |
1730243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 22338649 - 22338584
Alignment:
| Q |
52 |
ccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc |
117 |
Q |
| |
|
||||| || |||||||||| ||||| ||||| || ||| ||||||||||| |||||||||||||| |
|
|
| T |
22338649 |
ccgtcgagtgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcattc |
22338584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 14329086 - 14328899
Alignment:
| Q |
18 |
atcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc |
117 |
Q |
| |
|
|||||||||||||||||||| |||| || ||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||| |
|
|
| T |
14329086 |
atcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcatccatggcattc |
14328987 |
T |
|
| Q |
118 |
ttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat |
205 |
Q |
| |
|
|||| |||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
14328986 |
ttcagcaaaccttagatggtagggatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatgtgatgtccat |
14328899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 188
Target Start/End: Complemental strand, 18166706 - 18166551
Alignment:
| Q |
33 |
agcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttgg |
132 |
Q |
| |
|
|||||||||| | ||| |||||||||||| ||||||| |||||| ||||| || ||||||||||| ||| |||||||||| ||| | | ||||| | | |
|
|
| T |
18166706 |
agcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttcctaagcaaacgcttg |
18166607 |
T |
|
| Q |
133 |
acagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgca |
188 |
Q |
| |
|
|| ||||||||||| |||||| ||||||||||| || || || || |||||||| |
|
|
| T |
18166606 |
acggtaggaatgcatggctcaacatccagcatgaattgagtgcatctcaaaatgca |
18166551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 3e-59; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 24954790 - 24954977
Alignment:
| Q |
18 |
atcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc |
117 |
Q |
| |
|
|||||||||||||||||||| |||| || ||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||| |
|
|
| T |
24954790 |
atcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcatccatggcattc |
24954889 |
T |
|
| Q |
118 |
ttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat |
205 |
Q |
| |
|
|||| ||| ||||||| ||||| ||||| ||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
24954890 |
ttcagcaagccttggatggtagggatgcaaggctcagggtccaacatgaactgggtacacctcaaaatgcagaacatgtgttgtccat |
24954977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 188
Target Start/End: Complemental strand, 23195929 - 23195774
Alignment:
| Q |
33 |
agcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttgg |
132 |
Q |
| |
|
|||||||||| | ||| |||||||||||| ||||||| |||||| ||||| || ||||||||||| ||| ||||||||| ||| | | ||||| | | |
|
|
| T |
23195929 |
agcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagtgttcctaagcaaacacttg |
23195830 |
T |
|
| Q |
133 |
acagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgca |
188 |
Q |
| |
|
|| ||||||||||| |||||| |||||||||||| || || || || |||||||| |
|
|
| T |
23195829 |
acggtaggaatgcatggctcaacgtccagcatgaattgagtgcatctcaaaatgca |
23195774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 153
Target Start/End: Complemental strand, 23621515 - 23621413
Alignment:
| Q |
51 |
accgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggc |
150 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||| || ||||||||||| ||| |||||||||||||| | | ||||| || || ||||||||||| ||| |
|
|
| T |
23621515 |
accgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcattcctaagcaaacgtttaacggtaggaatgcatggc |
23621416 |
T |
|
| Q |
151 |
tca |
153 |
Q |
| |
|
||| |
|
|
| T |
23621415 |
tca |
23621413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 188
Target Start/End: Original strand, 22643440 - 22643577
Alignment:
| Q |
51 |
accgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggc |
150 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||| || ||||||||||| ||| ||||||| || ||| | | ||||| | |||| |||||||||| ||| |
|
|
| T |
22643440 |
accgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatggcgttcctaagcaaacgcttgacaataggaatgcatggc |
22643539 |
T |
|
| Q |
151 |
tcagggtccagcatgaactgggtacaccttaaaatgca |
188 |
Q |
| |
|
||| ||||||||||| || || || || |||||||| |
|
|
| T |
22643540 |
tcaacatccagcatgaattgagtgcatctcaaaatgca |
22643577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 152
Target Start/End: Original strand, 39009 - 39128
Alignment:
| Q |
33 |
agcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttgg |
132 |
Q |
| |
|
|||||||||| | ||| |||||||||||| ||||||| |||||| ||||| || ||||||||||| ||| |||||||||| ||| | | ||||| || | |
|
|
| T |
39009 |
agcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttcctaagcaaacgtttg |
39108 |
T |
|
| Q |
133 |
acagtaggaatgcagggctc |
152 |
Q |
| |
|
|| ||||||||||| ||||| |
|
|
| T |
39109 |
acggtaggaatgcatggctc |
39128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 152
Target Start/End: Complemental strand, 32729 - 32610
Alignment:
| Q |
33 |
agcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttgg |
132 |
Q |
| |
|
|||||||||| | ||| |||||||||||| ||||||| |||||| ||||| || ||||||||||| ||| |||||||||| ||| | | ||||| || | |
|
|
| T |
32729 |
agcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttcctaagcaaacgtttg |
32630 |
T |
|
| Q |
133 |
acagtaggaatgcagggctc |
152 |
Q |
| |
|
|| ||||||||||| ||||| |
|
|
| T |
32629 |
acggtaggaatgcatggctc |
32610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 188
Target Start/End: Original strand, 74533 - 74688
Alignment:
| Q |
33 |
agcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttgg |
132 |
Q |
| |
|
|||||||||| || ||| ||||||||| || |||| || |||||| ||||| || ||||||||||| ||| |||||||||| ||||| | |||| | | |
|
|
| T |
74533 |
agcggtatcaggtgtgataccgtcaagtgctctcaccattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttcttaagcaaatgcttg |
74632 |
T |
|
| Q |
133 |
acagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgca |
188 |
Q |
| |
|
|| ||||||||||| |||||| || |||||||| ||||| || || |||||||| |
|
|
| T |
74633 |
acggtaggaatgcatggctcaacatctagcatgaattgggtgcatctcaaaatgca |
74688 |
T |
|
Back To:
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Target: scaffold0319 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 153
Target Start/End: Original strand, 13680 - 13782
Alignment:
| Q |
51 |
accgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggc |
150 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||| || ||| ||||||||||| | |||||||||||| | | ||||| | ||| ||||||||||| ||| |
|
|
| T |
13680 |
accgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagcattcctaagcaaacgcttgacggtaggaatgcatggc |
13779 |
T |
|
| Q |
151 |
tca |
153 |
Q |
| |
|
||| |
|
|
| T |
13780 |
tca |
13782 |
T |
|
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Target: scaffold0040 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 153
Target Start/End: Original strand, 36101 - 36203
Alignment:
| Q |
51 |
accgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggc |
150 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| || ||| | || || ||| | |||||||||||| | | ||||| || ||||||||||||||| ||| |
|
|
| T |
36101 |
accgtcaagcgccctcagcattacatcaaagtaaagagcgtttacggaaccagcgtccatagcattcctaagcaaacgtttgacagtaggaatgcatggc |
36200 |
T |
|
| Q |
151 |
tca |
153 |
Q |
| |
|
||| |
|
|
| T |
36201 |
tca |
36203 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 153
Target Start/End: Complemental strand, 13284434 - 13284332
Alignment:
| Q |
51 |
accgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggc |
150 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| || ||| ||||||||||| | |||||||| ||| | | ||||| | ||| ||||||||||| ||| |
|
|
| T |
13284434 |
accgtcaagcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagcgttcctaagcaaacgcttgacggtaggaatgcatggc |
13284335 |
T |
|
| Q |
151 |
tca |
153 |
Q |
| |
|
||| |
|
|
| T |
13284334 |
tca |
13284332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 153
Target Start/End: Complemental strand, 14562292 - 14562190
Alignment:
| Q |
51 |
accgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggc |
150 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||| || ||| ||||||||||| | |||||||||||| | | ||||| | ||| ||||||||||| ||| |
|
|
| T |
14562292 |
accgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagcattcctaagcaaacgcttgacggtaggaatgcatggc |
14562193 |
T |
|
| Q |
151 |
tca |
153 |
Q |
| |
|
||| |
|
|
| T |
14562192 |
tca |
14562190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 14742024 - 14741960
Alignment:
| Q |
49 |
acaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagc |
113 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||||| || ||| ||||||||||| |||||||||| |
|
|
| T |
14742024 |
acaccatcaagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagc |
14741960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 153
Target Start/End: Original strand, 28736 - 28838
Alignment:
| Q |
51 |
accgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggc |
150 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| || ||| | ||||||||| | |||||||| ||| | | ||||| | ||| ||||||||||| ||| |
|
|
| T |
28736 |
accgtcaagcgccctcagcattacatcaaagtaaagagcgcttacagagccagcgtccatagcgttcctaagcaaacgcttgacggtaggaatgcatggc |
28835 |
T |
|
| Q |
151 |
tca |
153 |
Q |
| |
|
||| |
|
|
| T |
28836 |
tca |
28838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 12340 - 12276
Alignment:
| Q |
53 |
cgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc |
117 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| || ||| ||||||||||| | |||||||||||| |
|
|
| T |
12340 |
cgtcaagcgccctcagcattacatgaaagtaaagagcgctcacagagccagcgtccatagcattc |
12276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 18091 - 18027
Alignment:
| Q |
53 |
cgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc |
117 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| || ||| ||||||||||| | |||||||||||| |
|
|
| T |
18091 |
cgtcaagcgccctcagcattacatgaaagtaaagagcgctcacagagccagcgtccatagcattc |
18027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0282 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0282
Description:
Target: scaffold0282; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 2215 - 2148
Alignment:
| Q |
49 |
acaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcatt |
116 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||||| || || ||||||||||| ||||||||||||| |
|
|
| T |
2215 |
acaccatcaagcgccctcagcatgacatcaaagtagagcacgctcacagagccagcatccatagcatt |
2148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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