View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_405 (Length: 214)
Name: NF8912A_low_405
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_405 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 201
Target Start/End: Complemental strand, 1420058 - 1419863
Alignment:
| Q |
6 |
atgagatggacatcagaagctctccctgatatgtttccaaagcttatgccattaggaggttgattacataagaaagttgcatatgcagttccagtatctg |
105 |
Q |
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| T |
1420058 |
atgagacggccatcagaagctctccctgatatgtttccaaagcttatgccattaggaggttgattacataagaaagttgcatatgcagttccagtatctg |
1419959 |
T |
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| Q |
106 |
aatttgagtcaccaaagttataaattgcagggtacacacattcatgacttgaaacttgaataaatgtacatgtcacatacaggttgaaacaccaaa |
201 |
Q |
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| T |
1419958 |
aatttgagtcaccaaagttataaattgcagggtacacacattcatgacttgaaacttgaataaatgtacatgtcacatacaggttgaaacaccaaa |
1419863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 6 - 201
Target Start/End: Complemental strand, 1414512 - 1414314
Alignment:
| Q |
6 |
atgagatggacatcagaagctctccctgatatgtttccaaag---cttatgccattaggaggttgattacataagaaagttgcatatgcagttccagtat |
102 |
Q |
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| T |
1414512 |
atgagacggccatcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtat |
1414413 |
T |
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| Q |
103 |
ctgaatttgagtcaccaaagttataaattgcagggtacacacattcatgacttgaaacttgaataaatgtacatgtcacatacaggttgaaacaccaaa |
201 |
Q |
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| T |
1414412 |
ctgaatttgagtcaccaaagttataaattgcagggtacacacatttgtcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaa |
1414314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 1411136 - 1410992
Alignment:
| Q |
6 |
atgagatggacatcagaagctctccctgatatgtttccaaag---cttatgccattaggaggttgattacataagaaagttgcatatgcagttccagtat |
102 |
Q |
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| T |
1411136 |
atgagacggccatcagaagctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtaaatgttgcatatacagttccggtat |
1411037 |
T |
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| Q |
103 |
ctgaatttgagtcaccaaagttataaattgcagggtacacacatt |
147 |
Q |
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| T |
1411036 |
ccgaatttgaatcaccaaagttataaattgcagggtacacacatt |
1410992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 1408175 - 1408110
Alignment:
| Q |
82 |
ttgcatatgcagttccagtatctgaatttgagtcaccaaagttataaattgcagggtacacacatt |
147 |
Q |
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| T |
1408175 |
ttgcatttgctgctccagtatctgaatttgagtcaccaaaattgtaaattgcagggtactcacatt |
1408110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 1410963 - 1410914
Alignment:
| Q |
152 |
acttgaaacttgaataaatgtacatgtcacatacaggttgaaacaccaaa |
201 |
Q |
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| T |
1410963 |
acttgagacttgaataaatgtacatgccacataaagattgaaacaccaaa |
1410914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 3600574 - 3600508
Alignment:
| Q |
81 |
gttgcatatgcagttccagtatctgaatttgagtcaccaaagttataaattgcagggtacacacatt |
147 |
Q |
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| T |
3600574 |
gttgcatatccagctccagtatctgaattggagtcaccaaagttgtatattgctgggtagacacatt |
3600508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 14339441 - 14339375
Alignment:
| Q |
81 |
gttgcatatgcagttccagtatctgaatttgagtcaccaaagttataaattgcagggtacacacatt |
147 |
Q |
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| T |
14339441 |
gttgcatatccagctccagtatctgaattggagtcaccaaagttgtatattgctgggtagacacatt |
14339375 |
T |
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