View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_408 (Length: 211)
Name: NF8912A_low_408
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_408 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 23 - 198
Target Start/End: Original strand, 42445985 - 42446160
Alignment:
| Q |
23 |
tcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatctgccataatgacttctg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445985 |
tcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatctgccataatgacttctg |
42446084 |
T |
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| Q |
123 |
cagacacactaaatttagaaaacaaactcattgtcgatgaaacacttcagccggcaaatctttttgccacaggttc |
198 |
Q |
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| T |
42446085 |
cagacacactaaatttagaaaacaaactcattgtcgatgaaacacttcagccggcaaatctttttgccacaggttc |
42446160 |
T |
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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 3207947 - 3207862
Alignment:
| Q |
20 |
acctcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
105 |
Q |
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| T |
3207947 |
acctcaatgtcatgtcctcatcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaatc |
3207862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 3201973 - 3201888
Alignment:
| Q |
20 |
acctcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
105 |
Q |
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| T |
3201973 |
acctcgatgtcttgtcctcatcttagtggcattgctgctttgttgaaaaactcgcatccagattggtcaccagcagctataaaatc |
3201888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 3179008 - 3179090
Alignment:
| Q |
23 |
tcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
105 |
Q |
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| T |
3179008 |
tcaatgtcttgtcctcatctcagtggcattgctgcattgatcaaaagttctcatcctgattggtcgccagctgcaataaaatc |
3179090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 3239832 - 3239750
Alignment:
| Q |
23 |
tcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
105 |
Q |
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|||||||| || || ||||| ||||||||||| || ||| ||||||| ||||||||||||||||| ||||| || |||||||| |
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| T |
3239832 |
tcaatgtcttgtcctcatctcagtggcattgctgcattgatcaaaagttctcatcctgattggtcgccagctgcaataaaatc |
3239750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 3225764 - 3225703
Alignment:
| Q |
44 |
agtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
105 |
Q |
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| T |
3225764 |
agtggtattgctgcattgatcaaaagttctcatcctgattggtcaccagccgctataaaatc |
3225703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 3215883 - 3215798
Alignment:
| Q |
20 |
acctcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
105 |
Q |
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||||||||||| || |||||||| ||||| ||||| ||| || | |||| ||||||||| |||||||| || || || |||||||| |
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| T |
3215883 |
acctcaatgtcttgtccacatctcagtggaattgctgctctgttgaaaaactctcatccagattggtctcccgctgctataaaatc |
3215798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 18214753 - 18214797
Alignment:
| Q |
73 |
tcatcctgattggtcaccagcagccataaaatctgccataatgac |
117 |
Q |
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| T |
18214753 |
tcatcctgattggtcacctgcagctataaaatctgctatcatgac |
18214797 |
T |
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