View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_409 (Length: 210)
Name: NF8912A_low_409
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_409 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 12914087 - 12913907
Alignment:
| Q |
24 |
aacagagagaaaatagccgcgccaaatggagatcacaagcccaacaacaaatctactcttctaaactccaccaggctctggcgagagtaaacatcggcgg |
123 |
Q |
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| T |
12914087 |
aacagagagaaaatagccgtgctaaatggaggtcacaagcccaacaacaaatctactcttccaaactccaccaggctctggcaagagtcaacatcggcgg |
12913988 |
T |
|
| Q |
124 |
caccactggagggcctcgtcgaggcaaggcagtccgtgaagccgctgacagagctctcgccgtcgccgcaaaaggaagaac |
204 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12913987 |
caccactggagggcctcgtcgaggcaaggccgtccgtgaagccgctgacagagctctcgccgtcgccgcaaaaggaagaac |
12913907 |
T |
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