View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_41 (Length: 400)
Name: NF8912A_low_41
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 36603211 - 36603600
Alignment:
| Q |
1 |
ttatttcctctaatcctaaacaaaggaacaaaaccacacccatgaaagcaagaccagcatccaatgcaccagacaacacataattatgacgctgccacca |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603211 |
ttatttcctctaatcctaaacaaaggtacaaaaccacacccatgaaagcaagaccagcatccaatgcaccagacaacacataattatgacgctgccacca |
36603310 |
T |
|
| Q |
101 |
atctggtttatacctatacacaacaaacccagacaaaa-accaacaatgatccagctagtgtaattcactgctgtagctggtggcatcattccagtagca |
199 |
Q |
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||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603311 |
ttctggcttatacctatacacaacaaaaccagacaaaaaaccaacaatgatccagctagtgtaattcactgctgtagctggtggcatcattccagtagca |
36603410 |
T |
|
| Q |
200 |
cctatcaacacaggcatgttgatgagtgtaatccagtcttgttgtggaaaggctcttgtagctaaccaaactaacaaaggagcaatggctccacctagga |
299 |
Q |
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|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603411 |
cctatcaacacaggcatgttgatgagtttaatccattcttgttgtggaaaggctcttgtagctaaccaaactaacaaaggagcaatggctccacctagga |
36603510 |
T |
|
| Q |
300 |
agaaccaattgatagtctcgtaggttcctaagtttcagaagattcttcttggaccaattaagccccaaataactgatgcatcgtagaata |
389 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603511 |
agaaccaattgatattctcgtaggttcctaagtttccgaagattcttcttggaccaattaagccccaaataactgatgcatcgtagaata |
36603600 |
T |
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