View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_412 (Length: 209)
Name: NF8912A_low_412
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_412 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 14241977 - 14241792
Alignment:
| Q |
16 |
acatcaatggagtctttagttcttcaactccatgaaatctcagctgtcaaatttggtaacttcaagcttaaatccggcatctcctcaccaatttatatag |
115 |
Q |
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| T |
14241977 |
acatcaatggagtctttagttcttaaactccatgaaatctcagctgtcaaatttggaaacttcaagcttaaatccggcatctcctcaccaatttatatag |
14241878 |
T |
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| Q |
116 |
atctccgccttattatatcttacccttctgtcctccgacaaatttctcaaactatgatttcctctgtctccaacaccaaactcgac |
201 |
Q |
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| T |
14241877 |
acctccgccttattatatcttacccttctgtcctccgacaaatttctcaaactatgatttcctctgtctccaacactaaattcgac |
14241792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 5032357 - 5032487
Alignment:
| Q |
34 |
gttcttcaactccatgaaatctcagctgtcaaatttggtaacttcaagcttaaatccggcatctcctcaccaatttatatagatctccgccttattatat |
133 |
Q |
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||||||||||||||||| || |||||||| ||||| || ||||||||||| ||||| ||||||||||||||||| || || || ||||| || || || | |
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| T |
5032357 |
gttcttcaactccatgagatatcagctgtgaaattcggcaacttcaagctcaaatctggcatctcctcaccaatctacattgacctccgtctcataattt |
5032456 |
T |
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| Q |
134 |
cttacccttctgtcctccgacaaatttctca |
164 |
Q |
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| T |
5032457 |
cttatccttctctcctccagcaaatctctca |
5032487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 149
Target Start/End: Original strand, 7990537 - 7990652
Alignment:
| Q |
34 |
gttcttcaactccatgaaatctcagctgtcaaatttggtaacttcaagcttaaatccggcatctcctcaccaatttatatagatctccgccttattatat |
133 |
Q |
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||||||||||||||||| || |||||||| ||||| || ||||||||||| ||||| |||||| ||||||| || || || || ||||| || || |||| |
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| T |
7990537 |
gttcttcaactccatgagatatcagctgtgaaattcggcaacttcaagctcaaatctggcatcacctcaccgatctacattgacctccgtctcatcatat |
7990636 |
T |
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| Q |
134 |
cttacccttctgtcct |
149 |
Q |
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|||| |||||| |||| |
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| T |
7990637 |
cttatccttctctcct |
7990652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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