View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912A_low_415 (Length: 208)

Name: NF8912A_low_415
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8912A_low_415
NF8912A_low_415
[»] chr4 (2 HSPs)
chr4 (27-188)||(13305658-13305819)
chr4 (47-181)||(20846851-20846984)
[»] chr8 (1 HSPs)
chr8 (54-181)||(23354509-23354635)
[»] chr3 (2 HSPs)
chr3 (29-188)||(17384793-17384952)
chr3 (69-130)||(8897675-8897736)
[»] chr6 (2 HSPs)
chr6 (94-181)||(23090845-23090932)
chr6 (98-164)||(13442159-13442224)
[»] chr7 (6 HSPs)
chr7 (54-188)||(6461879-6462013)
chr7 (91-173)||(22522665-22522746)
chr7 (54-182)||(6211017-6211142)
chr7 (143-181)||(13474666-13474704)
chr7 (98-153)||(14194114-14194169)
chr7 (49-124)||(13486969-13487044)
[»] chr2 (2 HSPs)
chr2 (95-149)||(23154956-23155010)
chr2 (95-149)||(23566213-23566267)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 27 - 188
Target Start/End: Original strand, 13305658 - 13305819
Alignment:
Q  27 atataggctctaacgtagaggtgtcgctcttatgactttgtcttttgataccgttttttggcaaatgttaattatatgatgaggataattatatcatggt 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13305658 atataggctctaacgtagaggtgtcgctcttatgactttgtcttttgataccgttttttggcaaatgttaattatatgatgaggataattgtatcatggt 13305757  T
Q  127 gatgaatgttttgtggagtgacacatgacatgttgagatttattactcttgattttgaggat 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13305758 gatgaatgttttgtggagtgacacatgacatgttgagatttattactcttgattttgaggat 13305819  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 47 - 181
Target Start/End: Complemental strand, 20846984 - 20846851
Alignment:
Q  47 gtgtcgctcttatgactttgtcttttgataccgttttttggcaaatgttaattatatgatgaggataattatatcatggtgatgaatgttttgtggagtg 146  Q
    |||||| ||||||||   ||||||||||||||||||  || |  |||||||||||||||||| ||||||| ||||||| ||||| || || |||||||||    
T  20846984 gtgtcggtcttatgatcatgtcttttgataccgtttgatgacttatgttaattatatgatgaagataattgtatcatgatgatgtat-ttatgtggagtg 20846886  T
Q  147 acacatgacatgttgagatttattactcttgattt 181  Q
    ||||||| |||||||||||||||||||||||||||    
T  20846885 acacatggcatgttgagatttattactcttgattt 20846851  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 23354509 - 23354635
Alignment:
Q  54 tcttatgactttgtcttttgataccgttttttggcaaatgttaattatatgatgaggataattatatcatggtgatgaatgttttgtggagtgacacatg 153  Q
    ||||||||| ||||||||||||||||||| |||    ||||||||||||||||| |||||| | ||||||| ||||| || || |||||||| ||| |||    
T  23354509 tcttatgaccttgtcttttgataccgtttgttgtgttatgttaattatatgatgtggataactgtatcatgatgatgtat-ttatgtggagtaacaaatg 23354607  T
Q  154 acatgttgagatttattactcttgattt 181  Q
    ||||||||||||||||||||||||||||    
T  23354608 acatgttgagatttattactcttgattt 23354635  T

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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 29 - 188
Target Start/End: Complemental strand, 17384952 - 17384793
Alignment:
Q  29 ataggctctaacgtagaggtgtcgctcttatgactttgtcttttgataccgttttttggcaaatgttaattatatgatgaggataattatatcatggtga 128  Q
    ||||||||| | ||||  |||||| |||||||||  ||| |||||||||| |||  || |   | ||||||||||||||||||||||| |||||||||||    
T  17384952 ataggctctgatgtaggagtgtcggtcttatgaccatgtattttgataccttttgatgacttgttttaattatatgatgaggataattgtatcatggtga 17384853  T
Q  129 tgaatgttttgtggagtgacacatgacatgttgagatttattactcttgat-tttgaggat 188  Q
    || |  || |||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  17384852 tgtac-ttatgtggaatgacacatgacatgttgagatttattactcttgatatttgaggat 17384793  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 8897675 - 8897736
Alignment:
Q  69 ttttgataccgttttttggcaaatgttaattatatgatgaggataattatatcatggtgatg 130  Q
    |||||||||| |||  ||||  |||||| ||||||||||||||||||| |||||||||||||    
T  8897675 ttttgataccttttgatggcttatgttatttatatgatgaggataattgtatcatggtgatg 8897736  T

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Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 181
Target Start/End: Original strand, 23090845 - 23090932
Alignment:
Q  94 ttaattatatgatgaggataattatatcatggtgatgaatgttttgtggagtgacacatgacatgttgagatttattactcttgattt 181  Q
    |||||||||||||||||||| || |||||||||| ||||  || |||||||||| ||||| |||||||||||||||||||||||||||    
T  23090845 ttaattatatgatgaggatatttgtatcatggtggtgaaatttatgtggagtgatacatggcatgttgagatttattactcttgattt 23090932  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 13442159 - 13442224
Alignment:
Q  98 ttatatgatgaggataattatatcatggtgatgaatgttttgtggagtgacacatgacatgttgaga 164  Q
    ||||| |||||| |||||| |||||||||||||||| ||  ||||||||||||||||||||||||||    
T  13442159 ttatacgatgagtataattgtatcatggtgatgaat-ttacgtggagtgacacatgacatgttgaga 13442224  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 188
Target Start/End: Original strand, 6461879 - 6462013
Alignment:
Q  54 tcttatgactttgtcttttgataccgttttttggcaaatgttaattatatgatgaggataattatatcatggtgatgaatgttttgtggagtgacacatg 153  Q
    ||||||||| ||||||||||||||  |||  ||    ||||||| ||||| | |||||||||| |||||||||||||||| || ||||||  |||| |||    
T  6461879 tcttatgaccttgtcttttgatacattttgatgagttatgttaactatattacgaggataattgtatcatggtgatgaattttatgtggaaggacatatg 6461978  T
Q  154 acatgttgagatttattactcttgattttgaggat 188  Q
     ||||||||||||||||||  ||||||||||||||    
T  6461979 gcatgttgagatttattaccattgattttgaggat 6462013  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 22522665 - 22522746
Alignment:
Q  91 atgttaattatatgatgaggataattatatcatggtgatgaatgttttgtggagtgacacatgacatgttgagatttattact 173  Q
    ||||||||| |||||||||||||||| || |||||||||| || || |||||||||||||||| || ||||||||||||||||    
T  22522665 atgttaattttatgatgaggataattgtaccatggtgatgtat-ttatgtggagtgacacatgccaagttgagatttattact 22522746  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 182
Target Start/End: Original strand, 6211017 - 6211142
Alignment:
Q  54 tcttatgactttgtcttttgataccgttttttggcaaatgttaattatatgatgaggataattatatcatggtgatgaatgttttgtggagtgacacatg 153  Q
    |||||| || ||||||||||||||| |||  || |  |||||||||||||||||| ||||||| ||||||||||||| || || |||||||||||| ||     
T  6211017 tcttataaccttgtcttttgatacc-tttgatgacttatgttaattatatgatgaagataattgtatcatggtgatgtat-ttatgtggagtgaca-ata 6211113  T
Q  154 acatgttgagatttattactcttgatttt 182  Q
     ||| |||||||| |||||||||| ||||    
T  6211114 tcatattgagattgattactcttgttttt 6211142  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 13474704 - 13474666
Alignment:
Q  143 agtgacacatgacatgttgagatttattactcttgattt 181  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13474704 agtgacacatgacatgttgagatttattactcttgattt 13474666  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 14194114 - 14194169
Alignment:
Q  98 ttatatgatgaggataattatatcatggtgatgaatgttttgtggagtgacacatg 153  Q
    |||| |||||||||||| ||||||||| |||||||| || ||||||||||||||||    
T  14194114 ttatgtgatgaggataactatatcatgctgatgaatcttgtgtggagtgacacatg 14194169  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 13487044 - 13486969
Alignment:
Q  49 gtcgctcttatgactttgtcttttgataccgttttttggcaaatgttaattatatgatgaggataattatatcatg 124  Q
    |||| ||||||||| ||| ||||||||||||||| ||| |  |||||||||||||||  | ||||||| |||||||    
T  13487044 gtcggtcttatgaccttgccttttgataccgtttgttgacttatgttaattatatgaaaacgataattgtatcatg 13486969  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 23154956 - 23155010
Alignment:
Q  95 taattatatgatgaggataattatatcatggtgatgaatgttttgtggagtgaca 149  Q
    |||||||||||||||||||||| || | ||||||||||| || ||||||||||||    
T  23154956 taattatatgatgaggataattttaccgtggtgatgaattttatgtggagtgaca 23155010  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 23566213 - 23566267
Alignment:
Q  95 taattatatgatgaggataattatatcatggtgatgaatgttttgtggagtgaca 149  Q
    |||||||||||||||||||||| || | ||||||||||| || ||||||||||||    
T  23566213 taattatatgatgaggataattttaccgtggtgatgaattttatgtggagtgaca 23566267  T

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