View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_429 (Length: 204)
Name: NF8912A_low_429
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_429 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 27514580 - 27514410
Alignment:
| Q |
22 |
gttgtctaagagtgtaccctaccttcttaaacaa-tgtccaatacaaagcttccacttgctaccaaatgagatgtgcaacctcatatttgttgatgattt |
120 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||| || ||||||| |
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| T |
27514580 |
gttgtctaagagtgtaccctaccttcttaaacaaatgtccaatacaaagcttccacttgctaccaaatgagatgt-cagcctcatatttcttcatgattt |
27514482 |
T |
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| Q |
121 |
aattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtcca |
192 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27514481 |
aattggtgtacttcataattttgtaaacatgctttagacatgttttctgcattatgataatgctgatgtcca |
27514410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 27468781 - 27468957
Alignment:
| Q |
22 |
gttgtctaagagtgtaccctaccttcttaaacaa-tgtccaatacaaagcttccacttgctaccaaatgagat--------gtgcaacctcatatttgtt |
112 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || |
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| T |
27468781 |
gttgtctaagagtgtaccctaccttcttaaacaaatgtccaatacaaagcttccacttgctaccaaatgagatgtgctcaagtgcagcctcatatttctt |
27468880 |
T |
|
| Q |
113 |
gatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgt |
189 |
Q |
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| T |
27468881 |
catgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgccgatgt |
27468957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 27524219 - 27524041
Alignment:
| Q |
22 |
gttgtctaagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagat--------gtgcaacctcatatttgttg |
113 |
Q |
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| T |
27524219 |
gttgtcttagagtgtaccctaccttcttaaacaatatccaatacaaagcttccaattgctaccaaatgagatgtgctcaagtgcaacgtcatatttcttc |
27524120 |
T |
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| Q |
114 |
atgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtcca |
192 |
Q |
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|||||||||||||| | ||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27524119 |
atgatttaattggtttccttcataatttcgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcca |
27524041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 27508559 - 27508488
Alignment:
| Q |
24 |
tgtctaagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgt |
95 |
Q |
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| T |
27508559 |
tgtcttagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttcctaccaaatgagatgt |
27508488 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 27503618 - 27503442
Alignment:
| Q |
22 |
gttgtctaagagtgtaccctacctt-cttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgtg--caa------cctcatatttgtt |
112 |
Q |
| |
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||||||| ||||||| ||||||||| | |||||||||||||||||||||||||||||||||| |||| ||||||| ||| ||||||||||||| |
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| T |
27503618 |
gttgtcttagagtgtcccctacctttcctaaacaatgtccaatacaaagcttccacttgctaaaaaataagatgtgatcaagtatagcctcatatttgtt |
27503519 |
T |
|
| Q |
113 |
gatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtcca |
192 |
Q |
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| T |
27503518 |
catgatttaattagcg---tcaataattttgtaaacatgcttcagacatgttttcttcattatgataatgttgatgtcca |
27503442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 27476014 - 27476187
Alignment:
| Q |
22 |
gttgtctaagagtgtaccctacctt-cttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgtg--caa------cctcatatttgtt |
112 |
Q |
| |
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||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| ||||||| ||| ||||||||||||| |
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| T |
27476014 |
gttgtcttagagtgtaccctacctttcctaaacaatgtccaatacaaagcttccacttgctaaaaaataagatgtgatcaagtatagcctcatatttgtt |
27476113 |
T |
|
| Q |
113 |
gatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgt |
189 |
Q |
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||||||||||| | | | ||||| || || ||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
27476114 |
catgatttaattagcg---tcaataattttgtaagcatgcttcagacatgttttcttcattatgataatgccgatgt |
27476187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 27489723 - 27489628
Alignment:
| Q |
95 |
tgcaacctcatatttgttgatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtcca |
192 |
Q |
| |
|
||||||||||||||| || ||| ||||||||| |||| |||| || ||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
27489723 |
tgcaacctcatatttattcatgcattaattggt--actttgtaattttgtaaacatgctttagacatgttttcttcattatgaaaatgtcgatgtcca |
27489628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 27508486 - 27508425
Alignment:
| Q |
131 |
cttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtcca |
192 |
Q |
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| T |
27508486 |
cttcataattttataaacatgctgaagacatgttttcttcattatgacaatgctgatgtcca |
27508425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 27556974 - 27557021
Alignment:
| Q |
145 |
aaacatgctttagacatgttttcttcattatgataatgctgatgtcca |
192 |
Q |
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||||||||||||||||||||||||||||||||||| || |||| |||| |
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| T |
27556974 |
aaacatgctttagacatgttttcttcattatgatagtgttgatttcca |
27557021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 27517433 - 27517369
Alignment:
| Q |
28 |
taagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgaga |
92 |
Q |
| |
|
||||| ||||||| ||||||| |||||||| |||| |||||||||||||||| ||||| ||||| |
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| T |
27517433 |
taagattgtaccccaccttctcaaacaatggccaacacaaagcttccacttggaaccaattgaga |
27517369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 27506325 - 27506263
Alignment:
| Q |
130 |
acttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtcca |
192 |
Q |
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|||||||||| || ||||||| || |||||||||||||||||||| | | |||||||||||| |
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| T |
27506325 |
acttcataattttgtaaacatgtttcagacatgttttcttcattatcaaagtgctgatgtcca |
27506263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 27497875 - 27497908
Alignment:
| Q |
157 |
gacatgttttcttcattatgataatgctgatgtc |
190 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
27497875 |
gacatgttttcttcattatgataatgttgatgtc |
27497908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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