View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912A_low_431 (Length: 203)

Name: NF8912A_low_431
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8912A_low_431
NF8912A_low_431
[»] chr8 (2 HSPs)
chr8 (65-203)||(43053567-43053705)
chr8 (69-125)||(8216787-8216843)
[»] chr4 (2 HSPs)
chr4 (65-138)||(45516660-45516734)
chr4 (65-151)||(3155506-3155593)
[»] chr2 (1 HSPs)
chr2 (66-150)||(39567807-39567892)
[»] chr7 (2 HSPs)
chr7 (65-129)||(19718910-19718974)
chr7 (65-122)||(47795860-47795917)
[»] chr6 (2 HSPs)
chr6 (68-151)||(2206497-2206580)
chr6 (71-147)||(33736747-33736824)
[»] chr5 (1 HSPs)
chr5 (65-125)||(10771985-10772045)
[»] chr1 (2 HSPs)
chr1 (100-151)||(27140423-27140475)
chr1 (65-148)||(4549769-4549853)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 6e-73; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 65 - 203
Target Start/End: Complemental strand, 43053705 - 43053567
Alignment:
Q  65 gcagcttatagcataaacgcttatcgtgataaacatttatgtgtaagttatttctataacataaataaaataaaatttaattgttttatgcgccgacgcc 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43053705 gcagcttatagcataaacgcttatcgtgataaacatttatgtgtaagttatttctataacataaataaaataaaatttaattgttttatgcgccgacgcc 43053606  T
Q  165 tatttgtttggatggaggatcatgttttggaatgtagtg 203  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43053605 tatttgtttggatggaggatcatgttttggaatgtagtg 43053567  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 8216787 - 8216843
Alignment:
Q  69 cttatagcataaacgcttatcgtgataaacatttatgtgtaagttatttctataaca 125  Q
    |||||||||||||| |||||| ||||||||| |||||| ||||  |||| |||||||    
T  8216787 cttatagcataaacacttatcatgataaacacttatgtataagccatttatataaca 8216843  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 45516660 - 45516734
Alignment:
Q  65 gcagcttatagcataaacgcttatcgtgataaacatttatgtgtaagttatttctataacataaa-taaaataaa 138  Q
    ||||||||||||||||| | ||||| |||||||  ||||||| ||||||||| |||||||| ||| |||||||||    
T  45516660 gcagcttatagcataaatgtttatcatgataaatgtttatgtataagttattcctataacaaaaactaaaataaa 45516734  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 3155506 - 3155593
Alignment:
Q  65 gcagcttatagcataaacgcttatcgtgataaacatttatgtgtaagttatttctataacataa-ataaaataaaatttaattgtttt 151  Q
    ||||||||||| | || |||||||| |||||| ||| ||||| |||| |||||||||| || || |||||||||| || |||||||||    
T  3155506 gcagcttatagtacaagcgcttatcatgataagcatgtatgtataagctatttctatagcaaaagataaaataaagttaaattgtttt 3155593  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 39567807 - 39567892
Alignment:
Q  66 cagcttatagcataaacgcttatcgtgataaacatttatgtgtaagttatttctataacataa-ataaaataaaatttaattgttt 150  Q
    |||||||| |||||| |||||||| |||||| || || ||| |||| ||||||||||||| || |||||||||| || ||||||||    
T  39567807 cagcttattgcataagcgcttatcatgataagcacttgtgtataagatatttctataacaaaagataaaataaagttaaattgttt 39567892  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 19718910 - 19718974
Alignment:
Q  65 gcagcttatagcataaacgcttatcgtgataaacatttatgtgtaagttatttctataacataaa 129  Q
    |||||||||| || || | |||||| ||||||||| || |||||||| |||||||||||||||||    
T  19718910 gcagcttataacacaagcacttatcatgataaacacttgtgtgtaagctatttctataacataaa 19718974  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 47795860 - 47795917
Alignment:
Q  65 gcagcttatagcataaacgcttatcgtgataaacatttatgtgtaagttatttctata 122  Q
    |||||||||||||||| |||||||| |||||| || |||||| |||  ||||||||||    
T  47795860 gcagcttatagcataagcgcttatcatgataaccacttatgtataacctatttctata 47795917  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 2206497 - 2206580
Alignment:
Q  68 gcttatagcataaacgcttatcgtgataaacatttatgtgtaagttatttctataacataa-ataaaataaaatttaattgtttt 151  Q
    ||||||||||||| | |||||||| |||| ||||| ||| |||||||||| ||||||| || |||||||||| | ||||||||||    
T  2206497 gcttatagcataagctcttatcgt-ataagcatttctgtataagttatttttataacaaaagataaaataaagtataattgtttt 2206580  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 33736747 - 33736824
Alignment:
Q  71 tatagcataaacgcttatcgtgataaacatttatgtgtaagttatttctataacataa-ataaaataaaatttaattg 147  Q
    |||||||||  | |||||| |||| | || |||||| ||||||||||||||||||||| |||||||||| || |||||    
T  33736747 tatagcataggcacttatcatgatcagcacttatgtataagttatttctataacataacataaaataaagttaaattg 33736824  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 10772045 - 10771985
Alignment:
Q  65 gcagcttatagcataaacgcttatcgtgataaacatttatgtgtaagttatttctataaca 125  Q
    ||||||||||||||||  ||||||| |||||||||  ||||| |||| |||||||||||||    
T  10772045 gcagcttatagcataagtgcttatcatgataaacacatatgtataagctatttctataaca 10771985  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 27140423 - 27140475
Alignment:
Q  100 tttatgtgtaagttatttctataacataa-ataaaataaaatttaattgtttt 151  Q
    |||||||||||||||||||||||||| || ||||||||| ||| |||||||||    
T  27140423 tttatgtgtaagttatttctataacaaaagataaaataatattaaattgtttt 27140475  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 4549769 - 4549853
Alignment:
Q  65 gcagcttatagcataaacgcttatcgtgataaacatttatgtgtaagttatttctataacataa-ataaaataaaatttaattgt 148  Q
    ||||||||||||||||||||||| |  ||||||   ||||||  ||| ||||||||||||| || |||||||||| || ||||||    
T  4549769 gcagcttatagcataaacgcttagcacgataaatgcttatgtacaagctatttctataacaaaagataaaataaagttaaattgt 4549853  T

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