View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_433 (Length: 202)
Name: NF8912A_low_433
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_433 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 9e-72; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 42848740 - 42848588
Alignment:
| Q |
33 |
aatatgagtcgaaaaaatcgtcaaacagaataaaagtctttgaaatttacttctagtatcataaatcttgagtagttaaaattaaaattaaaattaagga |
132 |
Q |
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| T |
42848740 |
aatatgagtcgaaaaaatcatcaaacagaataatagtctttgaaatttacttctattatcataaatcttgagtagttaaaattaaaattaaaattaagga |
42848641 |
T |
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| Q |
133 |
agacttgagtacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaa |
185 |
Q |
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| T |
42848640 |
agacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaa |
42848588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 42855201 - 42855133
Alignment:
| Q |
116 |
aaaattaaaattaaggaagacttgagtacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaa |
185 |
Q |
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| T |
42855201 |
aaaattaaaattaaagaagacttaaatccctcccaatagtgaaaa-aaaatgaaaatgagatccagaaaa |
42855133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 42853349 - 42853242
Alignment:
| Q |
67 |
agtctttgaaatttacttctagtatcataaatcttgagtagttaaaattaaaattaaaattaaggaagacttgagtacctcccaatagtgaaaagaaaat |
166 |
Q |
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| T |
42853349 |
agtctttgaaatttacttctagaatcatacatcttgagtattta-----------aaaattaaggaagatttaaatccctcccaatagtgaaaagaaaat |
42853261 |
T |
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| Q |
167 |
gaaaatgagatcaagaaaa |
185 |
Q |
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| T |
42853260 |
taacatgggatccagaaaa |
42853242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 42855247 - 42855191
Alignment:
| Q |
116 |
aaaattaaaattaaggaagacttgagtacctcccaatagtgaaaagaaaatgaaaat |
172 |
Q |
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| T |
42855247 |
aaaatttaaattaaggaagacttaaatccctcccaatagtgaaaagaaaattaaaat |
42855191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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