View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_437 (Length: 201)
Name: NF8912A_low_437
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_437 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 3e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 10368671 - 10368795
Alignment:
| Q |
20 |
atcatctccttcatcacaacccgtgctgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatt |
119 |
Q |
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| T |
10368671 |
atcatctccttcatcacaacccgtactgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatt |
10368770 |
T |
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| Q |
120 |
tcgatctcaccccttatatatatat |
144 |
Q |
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| T |
10368771 |
tcgatctcaccccttatatatatat |
10368795 |
T |
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Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 10368827 - 10368873
Alignment:
| Q |
134 |
tatatatatatgcgtgtgtgtgtcttaaggaacaattgtggagtata |
180 |
Q |
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| T |
10368827 |
tatatatatatgcgtgtgtgtgtcttaaggaacaattgtggagtata |
10368873 |
T |
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Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 11659585 - 11659658
Alignment:
| Q |
61 |
attgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcacccctt |
134 |
Q |
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| T |
11659585 |
attgaaaaggacagcaagaacaagaaggaggctactatttcaaggtatgggtttgcatttcgatctcactcctt |
11659658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 11668754 - 11668827
Alignment:
| Q |
61 |
attgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcacccctt |
134 |
Q |
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| T |
11668754 |
attgaaaaggacagcaaaaagaagaaggaggctactatttcaaggtatcggtttgcatttcgatctcactcctt |
11668827 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 53239215 - 53239290
Alignment:
| Q |
24 |
tctccttcatcacaacccgtgctgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatt |
99 |
Q |
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| T |
53239215 |
tctccttcattgcaaccagcgctgcagtggtctgaaaattgaaaaggacagcaagaagaagaaagaagctactatt |
53239290 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 2170330 - 2170405
Alignment:
| Q |
24 |
tctccttcatcacaacccgtgctgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatt |
99 |
Q |
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| T |
2170330 |
tctccttcattgcaaccagcgctgcagtggtctgaaaattgaaaaggacagcaagaagaagaaagaagctactatt |
2170405 |
T |
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