View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_46 (Length: 390)
Name: NF8912A_low_46
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_46 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 38816583 - 38816194
Alignment:
| Q |
1 |
atgaagtctcggtgctagatatttatgggagatatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatctt |
100 |
Q |
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| T |
38816583 |
atgaagtctcggtgctagatatttatgggagatatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatctt |
38816484 |
T |
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| Q |
101 |
gctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaac |
200 |
Q |
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| T |
38816483 |
gctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaac |
38816384 |
T |
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| Q |
201 |
cttgttcttagggttttacattttgtctagattttgcagttggctactttttgtggttacagttggtatacatcacggccttacgtaaattaaactgact |
300 |
Q |
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| T |
38816383 |
cttgttcttagggttttacattttgtctagattttgcagttggctactttttgtggttacagttggtatacatcacggccttatgtaaattaaactgact |
38816284 |
T |
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| Q |
301 |
ttgtctgttagagaagggtatatagttgtatgaggtttctttgggtaggtgagaaattgaggttcaaaggatacaatataccttttcttg |
390 |
Q |
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| T |
38816283 |
ttgtctgttagagaagggtatatagttgtatgaggtttctttgggtaggtgagaaattgaggttcaaaggatacaatataccttttcttg |
38816194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 38821928 - 38821782
Alignment:
| Q |
67 |
tgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaaggga |
166 |
Q |
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| T |
38821928 |
tgttgtgtgtccaggtgaagatttgagcgatcttgctgtggactattcggtgtgcccatctaaagaagaaggaggaaggcttgggtgggtgagaaaggga |
38821829 |
T |
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| Q |
167 |
caaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttt |
216 |
Q |
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| T |
38821828 |
caaatggta---tgatgtttagatttgcttaaatcttgttcttagggttt |
38821782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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