View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_47 (Length: 389)
Name: NF8912A_low_47
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 5 - 383
Target Start/End: Complemental strand, 39804816 - 39804438
Alignment:
| Q |
5 |
cgaacaatatcgcgttcaggtagcaaagtatcgaatctgatacgattcagcgtagtttcagtttcaacaaatcaaaacccacgaaaccctagacaacaat |
104 |
Q |
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| T |
39804816 |
cgaacaacatcgcgttcaggtagcaaagtatcgaatctgatacgattcagcgtagtttcagtttcaacaaatcaaaacccacgaaaccctagacaacaat |
39804717 |
T |
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| Q |
105 |
ttgaagaagacgaagaagaagaaaaacgatgggatttagattcaacaatctgaatcccatttacagaacatgcatcacacgcctttccttttcaaaacac |
204 |
Q |
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| T |
39804716 |
ttgaagaagacgaagaagaagaaaaacgatgggatttagattcaacaatctgaatcccatttacagaacatgcatcacacgcctttccttttcaaaacac |
39804617 |
T |
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| Q |
205 |
ctccttccaccgccgaagtcaccgggattatttcaatcagaagcttctttcatttccccccaaaatccagcattcaaaattcctcaccgatggcatttcg |
304 |
Q |
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| T |
39804616 |
ctccttccaccgccggagtcaccgggattctttcaatcagaagcttctttcatttccccccaaaacccagcattcaaaatttctcaccgatggcatttcg |
39804517 |
T |
|
| Q |
305 |
gtcattctcacgatcatgatcatcatcatcctccaaagcatcttaaagaaggagagagtattttcaagctcggtctcgc |
383 |
Q |
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| T |
39804516 |
gtcattctcacgatcatgatcatcatcatcctccaaagcatcttaaagaaggagagaatattttcaagctcggtctcgc |
39804438 |
T |
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