View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_52 (Length: 386)
Name: NF8912A_low_52
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_52 |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 149700 - 149871
Alignment:
| Q |
1 |
tcatcatcacaacaaattgttgtaagtggaagtggaacaaacccttttatttcaactccattatatgtttcaagtggtggtgcaagttcttcaccttttg |
100 |
Q |
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| T |
149700 |
tcatcatcacaacaaattgttgtaagtggaagtggaacaaacccttttatttcaactccattatatgtttcaagtggtggtgcaagttcttcaccttttg |
149799 |
T |
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| Q |
101 |
aaacccaatttgaaacatccttaaccacaaaaagaccaagatatagtggacaatggaagcttctaccttcac |
172 |
Q |
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| T |
149800 |
aaacccaatttgaaacatccttaaccacaaaaagaccaagatatagtggacaatggaagcttctaccttcac |
149871 |
T |
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Target: scaffold0007; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 244 - 363
Target Start/End: Original strand, 149943 - 150062
Alignment:
| Q |
244 |
ccttcaccttcaaatctacctcaacaacaacctcaaacaacacctttagctgcttcttcatcagagacaacttcatcacaatctcatgatcattcaccaa |
343 |
Q |
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| T |
149943 |
ccttcaccttcaaatctacctcaacaacaacctcaaacaacacctttagctgcttcttcatcagagacaacttcatcacaatctcatgatcattcaccaa |
150042 |
T |
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| Q |
344 |
tgccttgtcaagaaggaaat |
363 |
Q |
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| T |
150043 |
tgccttgtcaagaaggaaat |
150062 |
T |
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