View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912A_low_55 (Length: 378)

Name: NF8912A_low_55
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8912A_low_55
NF8912A_low_55
[»] chr2 (4 HSPs)
chr2 (4-327)||(23348413-23348736)
chr2 (4-363)||(12742053-12742414)
chr2 (4-323)||(18354744-18355069)
chr2 (160-363)||(10328422-10328627)
[»] scaffold0596 (1 HSPs)
scaffold0596 (4-363)||(1019-1378)
[»] chr7 (3 HSPs)
chr7 (4-323)||(43070819-43071138)
chr7 (4-151)||(1262454-1262601)
chr7 (4-151)||(48849391-48849538)
[»] chr3 (8 HSPs)
chr3 (4-363)||(53972682-53973042)
chr3 (4-327)||(19881544-19881867)
chr3 (170-328)||(37982939-37983097)
chr3 (4-178)||(37982717-37982891)
chr3 (61-151)||(31685485-31685575)
chr3 (4-50)||(31685443-31685489)
chr3 (84-129)||(17682201-17682246)
chr3 (84-129)||(19766443-19766488)
[»] chr5 (4 HSPs)
chr5 (4-323)||(9044167-9044486)
chr5 (4-363)||(7472880-7473245)
chr5 (4-323)||(30441983-30442302)
chr5 (207-289)||(40163917-40163996)
[»] scaffold0035 (1 HSPs)
scaffold0035 (4-152)||(35426-35574)
[»] chr8 (5 HSPs)
chr8 (4-152)||(14677630-14677778)
chr8 (4-144)||(31100488-31100628)
chr8 (58-144)||(5658175-5658261)
chr8 (4-80)||(33688978-33689055)
chr8 (4-44)||(5658136-5658176)
[»] chr4 (1 HSPs)
chr4 (4-152)||(29862969-29863117)
[»] scaffold0045 (1 HSPs)
scaffold0045 (4-152)||(11242-11390)
[»] chr6 (5 HSPs)
chr6 (58-144)||(33045062-33045148)
chr6 (4-85)||(22000988-22001069)
chr6 (75-152)||(10092908-10092985)
chr6 (4-61)||(10092856-10092913)
chr6 (7-37)||(33045154-33045184)


Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 4 - 327
Target Start/End: Complemental strand, 23348736 - 23348413
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23348736 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 23348637  T
Q  104 ttctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgcgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttt 203  Q
    ||| ||| ||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  23348636 ttccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttt 23348537  T
Q  204 tccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaatt 303  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23348536 tccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaatt 23348437  T
Q  304 gattgatactttaaaatcatgtgt 327  Q
    ||||||||||||||||||||||||    
T  23348436 gattgatactttaaaatcatgtgt 23348413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 4 - 363
Target Start/End: Original strand, 12742053 - 12742414
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  12742053 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctccgccgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 12742152  T
Q  104 ttctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgcgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttt 203  Q
    ||| ||| ||||||||| ||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  12742153 ttccgacatcaccttcgtcgttgtcgtctgcggcatcgtatcagcaaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttt 12742252  T
Q  204 tccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaatt 303  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12742253 tccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaatt 12742352  T
Q  304 gattgatactttaaaatc--atgtgtannnnnnnnncaaacacaccaatatgtccattgatg 363  Q
    ||||||||||||||||||  |||||||         ||||||||||||||||||||||||||    
T  12742353 gattgatactttaaaatcatatgtgtatttttttttcaaacacaccaatatgtccattgatg 12742414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 4 - 323
Target Start/End: Complemental strand, 18355069 - 18354744
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 103  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18355069 tccatctcactctcagacattcaaacaaaattctctgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 18354970  T
Q  104 ttctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgcgttgaagatgctactatatatat------cctaaatcgttgttcttgt 197  Q
    ||| ||| |||||||||  ||||| ||||||||| |||||| || |||||| |||||||||||||||||||||||      ||||||||||||||| |||    
T  18354969 ttccgacatcaccttcgctgttgttgtctgcggcgtcgtatcagtcaggtgtgttgaagatgctactatatatatatatatcctaaatcgttgttcctgt 18354870  T
Q  198 aacttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaa 297  Q
    | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18354869 agcttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctcttaa 18354770  T
Q  298 taaattgattgatactttaaaatcat 323  Q
    ||||||||||||||||||||||||||    
T  18354769 taaattgattgatactttaaaatcat 18354744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 160 - 363
Target Start/End: Complemental strand, 10328627 - 10328422
Alignment:
Q  160 aagatgctactatatatat--cctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatg 257  Q
    |||||||||||||||||||  ||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10328627 aagatgctactatatatatatcctaaatcgttgttcatgtatcttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatg 10328528  T
Q  258 atatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgtannnnnnnnncaaacacaccaatatgtcca 357  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||         ||||||||||||||||||||    
T  10328527 atatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgtatttttttttcaaacacaccaatatgtcca 10328428  T
Q  358 ttgatg 363  Q
    ||||||    
T  10328427 ttgatg 10328422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 4 - 363
Target Start/End: Original strand, 1019 - 1378
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 103  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1019 tccacctcactctcagacatttaaacaaaattctctgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 1118  T
Q  104 ttctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgcgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttt 203  Q
    ||| ||| |||| |||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  1119 ttccgacatcactttcgccgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttt 1218  T
Q  204 tccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaatt 303  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1219 tccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaatt 1318  T
Q  304 gattgatactttaaaatcatgtgtannnnnnnnncaaacacaccaatatgtccattgatg 363  Q
    |||||||| ||||||||||||||||         ||||||||||||||||||||||||||    
T  1319 gattgatattttaaaatcatgtgtatttttttttcaaacacaccaatatgtccattgatg 1378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 4 - 323
Target Start/End: Complemental strand, 43071138 - 43070819
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43071138 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 43071039  T
Q  104 ttctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgcgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttt 203  Q
    ||| ||| ||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  43071038 ttccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttt 43070939  T
Q  204 tccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaatt 303  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43070938 tccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctcttaataaatt 43070839  T
Q  304 gattgatactttaaaatcat 323  Q
    ||||||||||||||||||||    
T  43070838 gattgatactttaaaatcat 43070819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 1262454 - 1262601
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1262454 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctttctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 1262553  T
Q  104 ttctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccag 151  Q
    ||| ||| ||||||||| ||||||||| ||||||||||||| ||||||    
T  1262554 ttccgacatcaccttcgccgttgtcgtatgcggcatcgtatcagccag 1262601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 48849538 - 48849391
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  48849538 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctttctccgtcgccgcagctctctcctttcgtcgcccttcaccaatgctctcga 48849439  T
Q  104 ttctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccag 151  Q
    ||| ||| ||||||||| ||||||||||||||||||||||| ||||||    
T  48849438 ttccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccag 48849391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 4 - 363
Target Start/End: Complemental strand, 53973042 - 53972682
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 103  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  53973042 tccacctcactctcagacatttaaacaaaattctctgtcgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 53972943  T
Q  104 ttctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgcgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttt 203  Q
    ||| ||| |||| |||| ||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  53972942 ttccgacatcactttcgtcgttgtcgtctgcggcatcgtatcagccaagtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttt 53972843  T
Q  204 tccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaatt 303  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  53972842 tccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaatt 53972743  T
Q  304 gattgatactttaaaatcatgtgta-nnnnnnnnncaaacacaccaatatgtccattgatg 363  Q
    |||||||||||||||||||||||||          ||||||||||||||||||||||||||    
T  53972742 gattgatactttaaaatcatgtgtattttttttttcaaacacaccaatatgtccattgatg 53972682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 4 - 327
Target Start/End: Complemental strand, 19881867 - 19881544
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 103  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||| || ||||||||||||||||||||    
T  19881867 tccacctcactctcagacattcaaacaaaattctctgtcgttgccgctctctccgtcaccgcagctctctcctgtcctcacccttcaccaatgctctcga 19881768  T
Q  104 ttctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgcgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttt 203  Q
    ||| ||| ||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  19881767 ttccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttt 19881668  T
Q  204 tccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaatt 303  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19881667 tccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaatt 19881568  T
Q  304 gattgatactttaaaatcatgtgt 327  Q
    ||||||||||||||||||||||||    
T  19881567 gattgatactttaaaatcatgtgt 19881544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 170 - 328
Target Start/End: Original strand, 37982939 - 37983097
Alignment:
Q  170 tatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatag 269  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37982939 tatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatag 37983038  T
Q  270 attttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgta 328  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37983039 attttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgta 37983097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 4 - 178
Target Start/End: Original strand, 37982717 - 37982891
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 103  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  37982717 tccacctcactctcagacattcaaacaaaattctctgtcgttgccgctctctccgtcgccgcagctctctcctatcgtcgcccttcaccaatgctctcga 37982816  T
Q  104 ttctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgcgttgaagatgctactatatatat 178  Q
    ||| ||| ||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  37982817 ttccgacatcaccttcgtcgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctaatatatatat 37982891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 31685485 - 31685575
Alignment:
Q  61 gccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccag 151  Q
    |||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||    
T  31685485 gccgcagctctctcctgtcgtcgcccttcaccaatgatatcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccag 31685575  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 31685443 - 31685489
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgc 50  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||    
T  31685443 tccacctcactctcagacattcaaacaaaattatatgccgttgccgc 31685489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 17682201 - 17682246
Alignment:
Q  84 cccttcaccaatgctctcgattctgacttcaccttcgacgttgtcg 129  Q
    ||||||||||||||||||||||| ||| ||||||| | ||||||||    
T  17682201 cccttcaccaatgctctcgattccgacatcacctttgccgttgtcg 17682246  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 19766443 - 19766488
Alignment:
Q  84 cccttcaccaatgctctcgattctgacttcaccttcgacgttgtcg 129  Q
    ||||||||||||||||| ||||| ||| ||||||||| ||||||||    
T  19766443 cccttcaccaatgctctagattccgacatcaccttcgccgttgtcg 19766488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 4 - 323
Target Start/End: Original strand, 9044167 - 9044486
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9044167 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 9044266  T
Q  104 ttctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgcgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttt 203  Q
    ||  ||| ||||||||| ||||||||||||| ||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  9044267 tttcgacatcaccttcgtcgttgtcgtctgcagcatcgtatcagccaagtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttt 9044366  T
Q  204 tccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaatt 303  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9044367 tccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaatt 9044466  T
Q  304 gattgatactttaaaatcat 323  Q
    ||||||||||||||||||||    
T  9044467 gattgatactttaaaatcat 9044486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 4 - 363
Target Start/End: Complemental strand, 7473245 - 7472880
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 103  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7473245 tccacctcactctcagacattcaaacaaaattctctgccgttgtcgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 7473146  T
Q  104 ttctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgcgttgaagatgctactatat----atatcctaaatcgttgttcttgtaa 199  Q
    ||| ||| ||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||    ||||||||||||||||||| |||||    
T  7473145 ttccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctactatatatatatatcctaaatcgttgttcctgtaa 7473046  T
Q  200 cttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaata 299  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7473045 cttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaata 7472946  T
Q  300 aattgattgatactttaaaatc--atgtgtannnnnnnnncaaacacaccaatatgtccattgatg 363  Q
    ||||||||||||||||||||||  |||||||         ||||||||||||||||||||||||||    
T  7472945 aattgattgatactttaaaatcatatgtgtatttttttttcaaacacaccaatatgtccattgatg 7472880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 4 - 323
Target Start/End: Complemental strand, 30442302 - 30441983
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 103  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  30442302 tccacctcactctcagacattcaaacaaaattctctgtcgttgccgctctctccgttgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 30442203  T
Q  104 ttctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgcgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttt 203  Q
    ||| ||| ||||||| | ||||||||||||||||||||||| |||||  || |||||||||||||||||||||||||||||||||||||| |||||||||    
T  30442202 ttccgacatcaccttggccgttgtcgtctgcggcatcgtatcagccatatgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttt 30442103  T
Q  204 tccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaatt 303  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  30442102 tccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaatt 30442003  T
Q  304 gattgatactttaaaatcat 323  Q
    ||||||||||||||||||||    
T  30442002 gattgatactttaaaatcat 30441983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 289
Target Start/End: Original strand, 40163917 - 40163996
Alignment:
Q  207 ctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattat 289  Q
    ||||||||||||||||||||||| ||| ||||||||| | ||||||   ||||||||| ||||||||||| || |||||||||    
T  40163917 ctaactttgttattccattatatatttagtttgtttggatgtgaat---tgatatttacatagattttacaattatgtattat 40163996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 35426 - 35574
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 103  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| || ||| ||||||||||    
T  35426 tccacctcactctcagacattcaaacaaaattctctgccgttgctgctctctccgtcgccgcagctctctcctgtcgtcgcctttgaccgatgctctcga 35525  T
Q  104 ttctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg 152  Q
    ||||||| ||||||||| ||||||||| ||||||||||||| |||||||    
T  35526 ttctgacatcaccttcgccgttgtcgtttgcggcatcgtatcagccagg 35574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 14677778 - 14677630
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 103  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  14677778 tccacctcactctcagacattcaaacaaaatcctctgccgttgccgctctctccgtcgccgcagctctctcctatcgtcacccttcaccaatgctctcga 14677679  T
Q  104 ttctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg 152  Q
    ||| ||| ||||||||| ||||||||||||| ||||||||| |||||||    
T  14677678 ttccgacatcaccttcgccgttgtcgtctgcagcatcgtatcagccagg 14677630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 31100628 - 31100488
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 103  Q
    |||||||||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  31100628 tccacctcactctcagacattcaaacaaaattctttgccgtcgccactctctccgtcgccgcaactctctcctgtcgtcgcccttcaccaatgctctcga 31100529  T
Q  104 ttctgacttcaccttcgacgttgtcgtctgcggcatcgtat 144  Q
    |||  || ||||||||| |||||||||||| ||||||||||    
T  31100528 ttccaacatcaccttcgccgttgtcgtctgtggcatcgtat 31100488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 5658175 - 5658261
Alignment:
Q  58 gtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtat 144  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||  || ||||||||| |||||||||||| ||||||||||    
T  5658175 gtcgccgcagctctctcctgtcgtcgcccttcaccaatgctcttgattccaacatcaccttcgccgttgtcgtctgtggcatcgtat 5658261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 33689055 - 33688978
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaa-ttctctgccgttgccgctctctctgtcgccgcagctctctcctgtcg 80  Q
    ||||||||||||| |||||||||||||| | |||||| || | ||||||||||| ||||||||||||||||| |||||    
T  33689055 tccacctcactcttagacattcaaacaagacttctctcccatcgccgctctctccgtcgccgcagctctctcatgtcg 33688978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 5658136 - 5658176
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgt 44  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  5658136 tccacctcactctcagacattcaaacaaaattctttgccgt 5658176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 29863117 - 29862969
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 103  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  29863117 tccacctcactctcagacattcaaacaaaattctctgtcgctgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccgatgctctcga 29863018  T
Q  104 ttctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg 152  Q
    ||| ||| |||| || | ||||||| ||||||||||||||| |||||||    
T  29863017 ttccgacatcacttttgccgttgtcatctgcggcatcgtatcagccagg 29862969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 11390 - 11242
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcga 103  Q
    |||||||||||| ||||||||||||||||||||| ||  ||  |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  11390 tccacctcactcccagacattcaaacaaaattctttgttgtcaccgctctctccgtcgccgcagctctctcttgtcgtcgcccttcaccaatgctctcga 11291  T
Q  104 ttctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg 152  Q
     || ||| ||||||||| |||||||||||||||||| | || |||||||    
T  11290 atccgacatcaccttcgccgttgtcgtctgcggcattgcatcagccagg 11242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 33045148 - 33045062
Alignment:
Q  58 gtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtat 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||| |||||||||||||||||||||||    
T  33045148 gtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccaacatcaccttcgtcgttgtcgtctgcggcatcgtat 33045062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 22001069 - 22000988
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcc 85  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  22001069 tccacctcactttcagacattcaaacaaaattctctgtcgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcc 22000988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 10092908 - 10092985
Alignment:
Q  75 ctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg 152  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||    
T  10092908 ctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgtcgttgtcgtctgcggcatcgtatcagccagg 10092985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 10092856 - 10092913
Alignment:
Q  4 tccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcg 61  Q
    ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  10092856 tccacctcactctcagacattcaaacaaaattctctaacgtcgccgctctctctgtcg 10092913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 33045184 - 33045154
Alignment:
Q  7 acctcactctcagacattcaaacaaaattct 37  Q
    |||||||||||||||||||||||||||||||    
T  33045184 acctcactctcagacattcaaacaaaattct 33045154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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