View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_62 (Length: 368)
Name: NF8912A_low_62
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 12171421 - 12171101
Alignment:
| Q |
1 |
tcataggaaagaatcaccagtgaaaacaagaactcacatttattggagtgccagag--gtaagaaatgctaatttccccaagaaaatgttccttgtcctc |
98 |
Q |
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| T |
12171421 |
tcataggaaataatcaccagtgaaaataagaactcacatttattggagtgccagagaggtaagaaatgctaatttccccaagaaaaagttccttgtcctc |
12171322 |
T |
|
| Q |
99 |
ggtaactacagttccagcacaagcagttgacagaacttcaaccaaggaaccaaccgcgcctccatgcagtgttccataggcattctgcatttccgacaaa |
198 |
Q |
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| T |
12171321 |
agcaactacagttctagcacaagcagttgacagaacttcaactaaggacccaacagcgcctccatgcagtgttccataggcattctgcaattccgacaaa |
12171222 |
T |
|
| Q |
199 |
gaaaatgagaagaatacagtctccacacaatcacatgacaatattaattta-tatacactc--ttttcagagaaatttttaactttgaactaagaaaagt |
295 |
Q |
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| T |
12171221 |
gaaaatgagaaaattccagtctcca---aat-acattac-attttaagttattatacactcaattttcagacaaatttttaactttgaaccaagaaaagt |
12171127 |
T |
|
| Q |
296 |
aacaagattcacttagactgagctgga |
322 |
Q |
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| | |||||||||||| |||||||||| |
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| T |
12171126 |
agc-agattcacttagcctgagctgga |
12171101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 12415849 - 12415529
Alignment:
| Q |
1 |
tcataggaaagaatcaccagtgaaaacaagaactcacatttattggagtgccagag--gtaagaaatgctaatttccccaagaaaatgttccttgtcctc |
98 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12415849 |
tcataggaaataatcaccagtgaaaataagaactcacatttattggagtgccagagaggtaagaaatgctaatttccccaagaaaaagttccttgtcctc |
12415750 |
T |
|
| Q |
99 |
ggtaactacagttccagcacaagcagttgacagaacttcaaccaaggaaccaaccgcgcctccatgcagtgttccataggcattctgcatttccgacaaa |
198 |
Q |
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| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12415749 |
agcaactacagttctagcacaagcagttgacagaacttcaactaaggacccaacagcgcctccatgcagtgttccataggcattctgcaattccgacaaa |
12415650 |
T |
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| Q |
199 |
gaaaatgagaagaatacagtctccacacaatcacatgacaatattaattta-tatacactc--ttttcagagaaatttttaactttgaactaagaaaagt |
295 |
Q |
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||||||||||| | | ||||||||| ||| |||| || || |||| ||| ||||||||| |||||||| |||||||||||||||||| ||||||||| |
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| T |
12415649 |
gaaaatgagaaaattccagtctcca---aat-acattac-attttaagttattatacactcaattttcagacaaatttttaactttgaaccaagaaaagt |
12415555 |
T |
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| Q |
296 |
aacaagattcacttagactgagctgga |
322 |
Q |
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| | |||||||||||| |||||||||| |
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| T |
12415554 |
agc-agattcacttagcctgagctgga |
12415529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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