View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912A_low_63 (Length: 367)

Name: NF8912A_low_63
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8912A_low_63
NF8912A_low_63
[»] chr4 (2 HSPs)
chr4 (21-353)||(40821517-40821849)
chr4 (21-126)||(40826201-40826306)
[»] chr7 (9 HSPs)
chr7 (21-321)||(20292021-20292311)
chr7 (32-141)||(20301393-20301502)
chr7 (21-119)||(20064893-20064991)
chr7 (21-126)||(20229247-20229352)
chr7 (21-126)||(20261830-20261935)
chr7 (134-209)||(20092587-20092660)
chr7 (21-117)||(20170431-20170527)
chr7 (21-117)||(20172424-20172520)
chr7 (21-141)||(20296617-20296737)
[»] scaffold0027 (1 HSPs)
scaffold0027 (98-143)||(135558-135603)


Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 21 - 353
Target Start/End: Original strand, 40821517 - 40821849
Alignment:
Q  21 ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacag 120  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  40821517 ctttggagataagagtttcagtgtcctttatgtactgggatgatgtgatgttggttatggcaatactaacttgtaacaaagtgcaaaacaaaatgaacag 40821616  T
Q  121 aacagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaatgatgattt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40821617 aacagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaataatgattt 40821716  T
Q  221 gagatttccttaaagtcaagagtctaaaaaatcacaagtaaatcatggttcttaaaatctctatcattttaaaaacttaacgttgtttgagtcatttcac 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  40821717 gagatttccttaaagtcaagagtctaaaaaatcacaagtaaatcatggttctgaaaatctctatcattttaagaacttaatgttgtttgagtcatttcac 40821816  T
Q  321 tacttatttaggttatcacttttcttttctttt 353  Q
    |||||||||||||||||||||||||||||||||    
T  40821817 tacttatttaggttatcacttttcttttctttt 40821849  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 40826201 - 40826306
Alignment:
Q  21 ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacag 120  Q
    |||||||||  |||||||| | |||||| ||| |||| |||||||||||| ||  ||| |||||||||| |||||   |||||||| ||| ||| ||||     
T  40826201 ctttggagagtagagtttcagggtccttgatgaattgagatgatgtgatggtgtctattgcaatactaaattgtagggaatagcaacacagaataaacaa 40826300  T
Q  121 aacaga 126  Q
    ||||||    
T  40826301 aacaga 40826306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 8e-80; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 21 - 321
Target Start/End: Complemental strand, 20292311 - 20292021
Alignment:
Q  21 ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacag 120  Q
    ||||||||||||||||||| | |||||| ||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||    
T  20292311 ctttggagataagagtttcagcgtccttgatgaattgggatgatgtgatggtgtttatggcaatattaacttgtaacaaatagcaaaacaaaatgaacag 20292212  T
Q  121 aacagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaatgatgattt 220  Q
    ||||||||||||||||||      ||||||  |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||    
T  20292211 aacagagagcatatttga------actgaa--acccattatatgatcaacaagtagactatgatacaaaaa-aaccactctttcttattaataatgattt 20292121  T
Q  221 gagatttc---cttaaagtcaagagtctaaaaaatcacaagtaaatcatggttcttaaaatctctatcattttaaaaacttaacgttgtttgagtcattt 317  Q
    ||||||||   ||||| |||||||||||||||||||||| ||||||||  ||||| ||||    ||| |||| ||||| |||| ||| |||||| |||||    
T  20292120 gagatttccttcttaacgtcaagagtctaaaaaatcacaggtaaatcaaagttctaaaaa----tattatttcaaaaaattaatgttctttgagacattt 20292025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 20301502 - 20301393
Alignment:
Q  32 agagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacagaacagagagca 131  Q
    |||||||| | |||||| ||| ||||||||||||||||| ||  |||  | ||||||||  ||||||||||| |||||| |||||||| |||| ||| ||    
T  20301502 agagtttcagggtccttgatgaattgggatgatgtgatggtgtctataccgatactaacacgtaacaaataggaaaacagaatgaacaaaacaaagaaca 20301403  T
Q  132 tatttgaaca 141  Q
     |||||||||    
T  20301402 gatttgaaca 20301393  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 20064893 - 20064991
Alignment:
Q  21 ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaaca 119  Q
    |||||||||  || ||||| | |||||| ||| ||||||||||||||||| ||  |||  | |||||||| |||||||||||  |||||| ||||||||    
T  20064893 ctttggagagtagtgtttcagggtccttgatgaattgggatgatgtgatggtgtctataccgatactaacatgtaacaaatacaaaaacacaatgaaca 20064991  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 20229352 - 20229247
Alignment:
Q  21 ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacag 120  Q
    |||||||||| |||||||| | ||| || ||  |||| |||||||||||| ||  |||  ||| |||||| |||| |||||||||| |||||||||| |     
T  20229352 ctttggagattagagtttcagggtctttgataaattgagatgatgtgatggtgtctataccaacactaacatgtaccaaatagcaacacaaaatgaataa 20229253  T
Q  121 aacaga 126  Q
    ||||||    
T  20229252 aacaga 20229247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 20261935 - 20261830
Alignment:
Q  21 ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacag 120  Q
    |||||||||| |||||||| | ||| || ||  |||| |||||||||||| ||  |||  ||| |||||| |||| |||||||||| |||||||||| |     
T  20261935 ctttggagattagagtttcagggtctttgataaattgagatgatgtgatggtgtctataccaacactaacatgtaccaaatagcaacacaaaatgaatac 20261836  T
Q  121 aacaga 126  Q
    ||||||    
T  20261835 aacaga 20261830  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 20092587 - 20092660
Alignment:
Q  134 tttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttatt 209  Q
    ||||||||||  |||||||||  ||||| ||||||| | | | | ||||||||| |||||||||||||||||||||    
T  20092587 tttgaacaacacctgaaacac--attatgtgatcaatactaaaagtatgatacataaacaaccactctttcttatt 20092660  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 20170431 - 20170527
Alignment:
Q  21 ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaa 117  Q
    |||||||||| |||||||| | ||| || ||  |||| |||||||||||| ||  |||  ||| |||||| |||| |||||||||| ||||||||||    
T  20170431 ctttggagattagagtttcagggtctttgataaattgagatgatgtgatggtgtctataccaacactaacatgtagcaaatagcaacacaaaatgaa 20170527  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 20172424 - 20172520
Alignment:
Q  21 ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaa 117  Q
    |||||||||| |||||||| | ||| || ||  |||| |||||||||||| ||  |||  ||| |||||| |||| |||||||||| ||||||||||    
T  20172424 ctttggagattagagtttcagggtctttgataaattgagatgatgtgatggtgtctataccaacactaacatgtagcaaatagcaacacaaaatgaa 20172520  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 20296737 - 20296617
Alignment:
Q  21 ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacag 120  Q
    |||| ||||| |||||||| | |||||| ||| ||||||| ||||| ||  ||  |||||||||||| |  |||||||||| |||||||| |||| | |     
T  20296737 cttttgagattagagtttcagggtccttgatgaattgggaagatgttatagtgtctatggcaatactcatgtgtaacaaattgcaaaacagaatggataa 20296638  T
Q  121 aacagagagcatatttgaaca 141  Q
    |||||| | || |||||||||    
T  20296637 aacagaaaacagatttgaaca 20296617  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 135558 - 135603
Alignment:
Q  98 aaatagcaaaacaaaatgaacagaacagagagcatatttgaacaac 143  Q
    ||||||||||||||||| |||| |||||||| || |||||||||||    
T  135558 aaatagcaaaacaaaattaacaaaacagagaacacatttgaacaac 135603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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