View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_68 (Length: 363)
Name: NF8912A_low_68
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_68 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 76 - 363
Target Start/End: Original strand, 9283091 - 9283378
Alignment:
| Q |
76 |
tattatggtaagatattaatgagctatgtgcacaagtggtagagtgagtattttatttggcagaggaatgtaagttagcaaatgttcctaagaggatatc |
175 |
Q |
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| T |
9283091 |
tattatggtaagatattaatgagctatgtgcacaagtggtagagtgagcattttatttgacagaggaatgtaagttagcaaatgttcctaagagcatatc |
9283190 |
T |
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| Q |
176 |
aattttgatcagtacgcttcgatcacaattgtttcaatggtgatgcctaattctactgctgaaccagcaagccaacttctcaatgagcctcacactgccg |
275 |
Q |
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| T |
9283191 |
aattttgaccaatacgcttcgatcacaatagtttcaatggtgatacctaattctattgttgaaccagcaagccaacttctcaatgagcctcaaactgccg |
9283290 |
T |
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| Q |
276 |
gctcaaatgtaatattattggctcttttttgagtcatctgaacataacatggatatgtatgtgcctgtgagatgatgagggtgatttt |
363 |
Q |
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| T |
9283291 |
gctcaaatataatattaatggctcttttttgagtcatctgaacataacatggatatgtatgtgcctgtgagatgatgagggtgatttt |
9283378 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 22956259 - 22956333
Alignment:
| Q |
50 |
gagtatttggaagcaaaagatccttatattatggtaagatattaatgagctatgtgcacaagtggtagagtgagt |
124 |
Q |
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||||||||||||||| | || ||||| || |||| ||||| ||||||||||||| |||||||||||||| |||| |
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| T |
22956259 |
gagtatttggaagcacatgaaccttaaatcatggcaagatgttaatgagctatgcacacaagtggtagagcgagt |
22956333 |
T |
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