View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8912A_low_69 (Length: 363)
Name: NF8912A_low_69
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_69 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 34 - 356
Target Start/End: Original strand, 13879570 - 13879887
Alignment:
| Q |
34 |
agacatcaatctcttccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatc |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13879570 |
agacatcaatctcttccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaag---atc |
13879666 |
T |
|
| Q |
134 |
atcatcnnnnnnnnnnnnnnnnnnnnnnnncagctcattggtgttgaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcg |
233 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
13879667 |
atcatcatcatcgttgttgttgttgttgttcagctcattggtgttgaaatagcgaatgagtcgtggagtggcgtaggagatggcaaccagagacatggcg |
13879766 |
T |
|
| Q |
234 |
gcagtagcgaaggggcggtggcgaatgaatgcaggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttgacag |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13879767 |
gcagtagcgaaggggcggtggcgaatgaatgcaggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttaacag |
13879866 |
T |
|
| Q |
334 |
ttgacagagtgagattttcttgg |
356 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
13879867 |
ttgac--agtgagattttcttgg |
13879887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 167 - 330
Target Start/End: Original strand, 13875477 - 13875640
Alignment:
| Q |
167 |
ctcattggtgttgaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaatgca |
266 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| || | |||||||||||| || || ||||||||||||||||||| |||| || ||||||||| || | |
|
|
| T |
13875477 |
ctcattggtgttgaaatagcgaatgagtggaggtgcggtgtaggagatggctacgagtgacatggcggcagtagcgacggggtggcggcgaatgagtgaa |
13875576 |
T |
|
| Q |
267 |
ggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttga |
330 |
Q |
| |
|
|||||||||| |||||| ||| |||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13875577 |
ggcacggcggccatgaatgagcggtagcaggaagagaggaggcgggaaaatgccattgtgttga |
13875640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 13875353 - 13875448
Alignment:
| Q |
34 |
agacatcaatctcttccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagat |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||| ||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
13875353 |
agacatcaatctcttccttcctcacgttgttggcgaccagattcaaccgaaaaatcaaagactcctcggtctcctcaaaatcacagagaacaagat |
13875448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 13885720 - 13885756
Alignment:
| Q |
294 |
gaggaagaaaggaggcgggaaaatgccattgtgttga |
330 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
13885720 |
gaggaagagaggaagcgggaaaatgccattgtgttga |
13885756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University