View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8912A_low_70 (Length: 363)
Name: NF8912A_low_70
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_70 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 13 - 363
Target Start/End: Original strand, 32472717 - 32473067
Alignment:
| Q |
13 |
gaataaggagaggtttatgttgttttgaagggaataaggataaagcttggagaacaagatcacgtgcggcgatatctacgaaaacgagtttggattcgca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32472717 |
gaataaggagaggtttatgttgttttgaagggaataaggataaagcttggagaacaagatcacgtgcggcgatatccacgaaaacgagtttggattcgca |
32472816 |
T |
|
| Q |
113 |
gtggaggaggatgttggagatgatacgcgcgtcaaggcgcgtgttgatgttgttaaggatagctccggtgaagggaacggcgaagtggagttcatacatg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32472817 |
gtggaggaggatgttggagatgatacgcgcgtcaaggcgcgtgttgatgttgttaaggatagctccggtgaaggggacggcgaagtggagttcatacatg |
32472916 |
T |
|
| Q |
213 |
gcggggatgttgggagcgatgacggagacgacgttgccgcggcggatacctaaggaggtgatggcggaggcaagttggaggcatcgtttgtgggtttgag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32472917 |
gcggggatgttgggagcgatgacggagacgacgttgccgcggcggatacctaaggaggtgatggcggaggcaagttggaggcatcgtttgtgggtttgag |
32473016 |
T |
|
| Q |
313 |
accatgtgaaaacggtgtcgttgtagatgatggaaggtgtgttggggtaga |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32473017 |
accatgtgaaaacggtgtcgttgtagatgatggaaggtgtgttggggtaga |
32473067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University