View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_75 (Length: 358)
Name: NF8912A_low_75
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_75 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 266
Target Start/End: Original strand, 24363256 - 24363510
Alignment:
| Q |
6 |
actttccaatacaaaactatcaataaattaagaaagtgcaaccaccaaagtaacgaactatctaaaggtagtggccctatgatacattaacnnnnnnnnn |
105 |
Q |
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| T |
24363256 |
actttccaatacaaaactatcaataaattaagaaagtgcaaccaccaaagtaacgaactatctaaaggtagtggccctatgatacattaa------tttt |
24363349 |
T |
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| Q |
106 |
nnnnaaacgagcaacaaaatcaacatggaaaaatgtgatagttagacaagtataattaatgaataagcaaattagtagtatgagtgttttacacttattt |
205 |
Q |
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| T |
24363350 |
ttttaaatgagcaacaaaatcaacatggaaaaatgtgatagttagacaagtataattaatgaataagcaaattagtactatgagtgttttacacttattt |
24363449 |
T |
|
| Q |
206 |
gaaatatatcacaatgtaaatttgagggtcctggatcctctactgcagcactcacaatagg |
266 |
Q |
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| T |
24363450 |
aaaatatatcacaatgtaaatttgagggtcctggatcctctactgcagcactcacaatagg |
24363510 |
T |
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