View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8912A_low_80 (Length: 353)
Name: NF8912A_low_80
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_80 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 106 - 329
Target Start/End: Original strand, 1239798 - 1240021
Alignment:
| Q |
106 |
tgaagaatgttttctctgacttagaagccaaaactagcaatagagaacccaattgactaacactcattgtaaccacacaacaaataataaagaatctata |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1239798 |
tgaagaatgttttctctgacttagaagccaaaactagcaatagagaacccaattgactaacactcattgtaaccacacaacaaattataaagaatctata |
1239897 |
T |
|
| Q |
206 |
cctatgacttataatccataattgtcttctaatcctcacatgttccttaaatataacacctgcttcagaaccacacccttcaaaaagcttatgaacacct |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||| || ||||||||| |
|
|
| T |
1239898 |
cctatgacttataatccataattgtcttctaattctcacatgttctttaaatataacacccgcttctgaaccacacccttcaaaaagtttgtgaacacct |
1239997 |
T |
|
| Q |
306 |
tcaaatcttaatatttgaagctga |
329 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
1239998 |
tcaaatcttaatatttggagctga |
1240021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 38482253 - 38482180
Alignment:
| Q |
20 |
tttaacatacatgctccccaggttaaaccaggaatttcaacgctgcgaacagcttcttccagcttcttcatatc |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38482253 |
tttaacatacatgctccccaggttaaaccaggaatttcaacgctgcgaacagcttcttccagcttcttcatatc |
38482180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 38468953 - 38468883
Alignment:
| Q |
20 |
tttaacatacatgctccccaggttaaaccaggaatttcaacgctgcgaacagcttcttccagcttcttcat |
90 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
38468953 |
tttaacatacatgctccccaggttaaaccgggaatttcaacggtgcgaacagcctcttccagcttcttcat |
38468883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University