View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_87 (Length: 346)
Name: NF8912A_low_87
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_87 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 43 - 346
Target Start/End: Original strand, 9805034 - 9805337
Alignment:
| Q |
43 |
attttattttaatttattatccacagatggatttcttatactcttcaaattccccatcttacttttggggaagagtcttcctgctcatcactggtgcttt |
142 |
Q |
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| T |
9805034 |
attttattttaatttattatccacacatggatttcttatactcttcaaattccccatcttacctttggggaagagtcttcctcctcatcaccagtgcttt |
9805133 |
T |
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| Q |
143 |
tcattttgttcaacaagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaata |
242 |
Q |
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| T |
9805134 |
tcattttgttcaacaagaattccttttccctttgatgcattcctatgtacaaaaatttaatataaaatgtgtactagaagtaaatagaaaataacaaata |
9805233 |
T |
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| Q |
243 |
caagtacatattttaataaccgaataaaacaaaaatcacaatataccttgattctcccttttcgcgagtacatgaaataccttccatcttatcctgttca |
342 |
Q |
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| T |
9805234 |
caagtacatattttaataaccgaataaaaaaaaaatcacaatataccttgattctcccttttcgcgagtacatgaaataccttccatcttgtcctgttca |
9805333 |
T |
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| Q |
343 |
atga |
346 |
Q |
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|||| |
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| T |
9805334 |
atga |
9805337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 43 - 291
Target Start/End: Original strand, 9817959 - 9818211
Alignment:
| Q |
43 |
attttattttaatttattatccacagatggatttcttat--actcttcaaattccccatcttacttttggggaagagtcttcctgctcatcactggtgct |
140 |
Q |
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| T |
9817959 |
attttattttaatttattatctacacatggatttcttttctactcttcaaattccccatcttacctttggggaagagtcttcctcctcatcactagtgct |
9818058 |
T |
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| Q |
141 |
tttcattttgttcaacaagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaa |
240 |
Q |
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| T |
9818059 |
tttcattttgttcaacaagaattccttttccctttgatgcattcttgtgtacaaaaatttaatataaattgtgtactagaagtaaatagaaaataacaaa |
9818158 |
T |
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| Q |
241 |
tacaagtacatattttaataaccgaataaaacaa--aaatcacaatatacctt |
291 |
Q |
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| T |
9818159 |
tacaagtacataatttaataaccgtataaaaaaaataaatcacaatatacctt |
9818211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 81 - 346
Target Start/End: Complemental strand, 9806718 - 9806459
Alignment:
| Q |
81 |
tactcttcaaattccccatcttacttttggggaagagtcttcctgctcatcactggtg-----cttttcattttgttcaacaagaattccttttcccttt |
175 |
Q |
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| T |
9806718 |
tactcttcaaattccccaccttactttcggg-aatagtcttcctcctcttctatagtggcctcctcttcattttgttcaacaataattccttttccctt- |
9806621 |
T |
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| Q |
176 |
gatgcatttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaaa |
275 |
Q |
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| T |
9806620 |
-----------gtgtacaaaaattaaatataaaatgtgtattagaaacaaatagaaaataacaaacacaagtacatatttgaataaccaactaaaataaa |
9806532 |
T |
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| Q |
276 |
--aatcacaatataccttgattctcccttttcgcgagtacatgaaataccttccatcttatcctgttcaatga |
346 |
Q |
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| T |
9806531 |
taaatcacaatataccttgattctcccttttcgtgagcacgtgaaataccttccatcttgtcttgttcaatga |
9806459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 43 - 346
Target Start/End: Original strand, 11968 - 12278
Alignment:
| Q |
43 |
attttattttaatttattatccacagatggatttcttat---actcttcaaattccccatcttacttttggggaagagtcttcctgctcatcactggtg- |
138 |
Q |
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||||||||||| |||||||| ||| || |||||||||| |||||||||||||||||||||||||| ||| |||||||||||| | |||||| ||| |
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| T |
11968 |
attttattttattttattatgtacacatagatttcttattctactcttcaaattccccatcttactttaggg-aagagtcttcctcgttatcactagtgg |
12066 |
T |
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| Q |
139 |
----cttttcattttgttcaacaagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaat |
234 |
Q |
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||||||||||||||||||||||||||||| |||||| | |||||| |||||| ||||||||| |||||||| |||||||||||||||| |||| |
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| T |
12067 |
catccttttcattttgttcaacaagaattccttctcccttcgctgcattatcgtgtaccaaaatttaatataaaatg-gtactagaagtaaatataaaat |
12165 |
T |
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| Q |
235 |
aacaaatacaagtacatattttaataaccgaataaaacaa-aaatcacaatataccttgattctcccttttcgcgagtacatgaaataccttccatctta |
333 |
Q |
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| T |
12166 |
aacaaacataagtacataattgaataaccaactaaaaaaataaatcacaaaatacgttgattcccccttttcatgagtacatggaataccttccatcttg |
12265 |
T |
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| Q |
334 |
tcctgttcaatga |
346 |
Q |
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|| || ||||||| |
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| T |
12266 |
tcatgatcaatga |
12278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 325
Target Start/End: Original strand, 2371052 - 2371144
Alignment:
| Q |
234 |
taacaaatacaagtacatattttaataaccgaataaaacaa-aaatcacaatataccttgattctcccttttcgcgagtacatgaaatacctt |
325 |
Q |
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| T |
2371052 |
taacaaacataagtatatatttgaataatcgactaaaaaaataaatcacaatataccttgattctcctttttcacgagtacatggaatacctt |
2371144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 25633927 - 25633898
Alignment:
| Q |
20 |
acatttttcacaagaaactcgtcattttat |
49 |
Q |
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| T |
25633927 |
acatttttcacaagaaactcgtcattttat |
25633898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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