View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_88 (Length: 338)
Name: NF8912A_low_88
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_88 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 36468546 - 36468679
Alignment:
| Q |
1 |
atataaatgaattagtaatattttgtttgtaagctgattttaactctaactcaattaacttattttcataaacttgttttgctttcgttcaatcttcaat |
100 |
Q |
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| T |
36468546 |
atataaatgaattagaaatattttgtttgtaacctgattttaactctaactcatttaacttattttcataaacttgttttgctttcgttcaatcttcaat |
36468645 |
T |
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| Q |
101 |
tgttaaaaacaacttgtgcacaaattaaattctt |
134 |
Q |
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| T |
36468646 |
tgttaaaaacaacttgtgcacaaattaaattctt |
36468679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 218 - 312
Target Start/End: Original strand, 36470228 - 36470322
Alignment:
| Q |
218 |
tcttaatcttttcttctctatcctcaatcctgtccactattacactccacccttgcattttccctccccttatctgatttctaataacaaatagt |
312 |
Q |
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| T |
36470228 |
tcttaatcttttattctcaatcctcaatcctgtccactattacactccacccttgcattttccctccccttatctgatttctaataataaatagt |
36470322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 36469936 - 36470006
Alignment:
| Q |
152 |
aaaggaaatatacctttctcgctcatccaactttttaaataagagcgtcatttacacattttagcatctta |
222 |
Q |
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| T |
36469936 |
aaaggaaatatatctttctcgctcagccaactttttaaataagagcgtcatttacacattttagcatctta |
36470006 |
T |
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