View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_93 (Length: 336)
Name: NF8912A_low_93
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_93 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 71 - 327
Target Start/End: Complemental strand, 44535335 - 44535079
Alignment:
| Q |
71 |
tgctagagaccccttgcaagcattttctcgtaattctcaatggattgaagcctttgaatcacgagttgtttcctgaaattcttgatgaaggcatcagcac |
170 |
Q |
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| T |
44535335 |
tgctagagaccccttgcaagcattttctcataattctcaatggattgaagcctttgaatcacgagttgtttcctgaaattcttgatgaaggcatcagcac |
44535236 |
T |
|
| Q |
171 |
tggcattgatgtcttctgtagtcttcctctctagcttcttatttgttttaaaggagtcctcaactttctttacctcattatgatcatatgataatgaagt |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44535235 |
tggcattgatgtcttctgtagtcttcctctctagcttcttatttgtttcaaaggagtcctcaactttctttacctcattatgatcatatgataatgaagt |
44535136 |
T |
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| Q |
271 |
tgatgagtttctcatcttctccctcatgttggtagtaaccttttcctctatattctt |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44535135 |
tgatgagtttctcatcttctccctcatgttggtagtaaccttttcctctattttctt |
44535079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 2579856 - 2579963
Alignment:
| Q |
80 |
ccccttgcaagcattttctcgtaattctcaatggattgaagcctttgaatcacgagttgtttcctgaaattcttgatgaaggcatcagcactggcattga |
179 |
Q |
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||||| |||||||||||||| ||||||||||| ||||||||||| |||| || || || | ||| || ||||| ||||||||||||||||| ||||||| |
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| T |
2579856 |
cccctagcaagcattttctcataattctcaatagattgaagcctctgaagcataagctgctgcctaaagttcttaatgaaggcatcagcactagcattga |
2579955 |
T |
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| Q |
180 |
tgtcttct |
187 |
Q |
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| |||||| |
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| T |
2579956 |
tatcttct |
2579963 |
T |
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