View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_98 (Length: 333)
Name: NF8912A_low_98
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_98 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 32960120 - 32960361
Alignment:
| Q |
6 |
actgatatgaatagtggatttgaactaagccatcaagcttgaatgatcccaatttatgaagttggatttggggtgcaaaagaagaaataaatcagaaaat |
105 |
Q |
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| T |
32960120 |
actgatatgaatagtggatttgaactaagccatcaagcttgaatgatcccaatttatgaagttggatttggggtgcaaaagaagaaataaatcagaaaat |
32960219 |
T |
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| Q |
106 |
taaacatagtggcaaatatattgctgggaaagttcatatacaaattcattgatcatcagattataaagtttttcatatataagttatttcttctacacag |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32960220 |
taaacatagtggcaaatatattgctgggaaagttcatatacaaattcattgatcatcagattataaagtttttcatatataagttat---ttctacacat |
32960316 |
T |
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| Q |
206 |
aaaactaaagatcaatagctaaggcaaaagttcattcatttgatt |
250 |
Q |
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| T |
32960317 |
aaaactaaagatcattagctaaggcaaaagttcattcatttgatt |
32960361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 25526428 - 25526471
Alignment:
| Q |
153 |
attgatcatcagattataaagtttttcatatataagttatttct |
196 |
Q |
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| T |
25526428 |
attgttcatcagattataaagttttccatatataagttgtttct |
25526471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 33869801 - 33869765
Alignment:
| Q |
160 |
atcagattataaagtttttcatatataagttatttct |
196 |
Q |
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| T |
33869801 |
atcagattataaagttttccgtatataagttatttct |
33869765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 37896110 - 37896072
Alignment:
| Q |
158 |
tcatcagattataaagtttttcatatataagttatttct |
196 |
Q |
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| T |
37896110 |
tcatcagattataaagttttccaaatataagttatttct |
37896072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 37898507 - 37898455
Alignment:
| Q |
23 |
atttgaactaagccatcaagcttgaatgatcccaatttatgaagttggatttg |
75 |
Q |
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||||||||||||||||||| |||||| | |||||||||| || ||||||||| |
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| T |
37898507 |
atttgaactaagccatcaatcttgaacaaacccaatttattaatttggatttg |
37898455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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