View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_99 (Length: 332)
Name: NF8912A_low_99
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_99 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 23 - 332
Target Start/End: Complemental strand, 33339506 - 33339199
Alignment:
| Q |
23 |
cactcttccagcagctattggagagactacatcaacactactcattatcgtttcaacgccgccattgaggacaccataatttgggctcacaacaaaaatg |
122 |
Q |
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| T |
33339506 |
cactcttccagcagctattggaga--ctacatcaacactactcattatcgtttcaatgccgccattgaggacaccataatttgggctcacaacaaaaatg |
33339409 |
T |
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| Q |
123 |
gcagctacactactaaaagccgttatgcatggcttctttccctcaaagctacagtggctgatcctagttctcatcattcatggacttggatttggagatt |
222 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33339408 |
gcagctacactactaaaagcggctatgcatggcttctttccctcaaagctacagtggcagatcctagttctcatcattcatggatttggatttggagatt |
33339309 |
T |
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| Q |
223 |
gcaagttccggaaaaatataaatttctcatttggttagctagccacaatgcctcccctactttatctttgcttcatcataggaatatggcaccttcggcc |
322 |
Q |
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| T |
33339308 |
gtaagttctggaaaaatataaatttctcatttggttagcttgccacaatgcctcccctactttatctttgcttcatcatagtaatatggcaccttcggct |
33339209 |
T |
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| Q |
323 |
acctgtgcac |
332 |
Q |
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|||||||||| |
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| T |
33339208 |
acctgtgcac |
33339199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 55417300 - 55417246
Alignment:
| Q |
192 |
ctcatcattcatggacttggatttggagattgcaagttccggaaaaatataaatt |
246 |
Q |
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| T |
55417300 |
ctcatcagtcttggtcttggatttggacattgcaccttccggaaaaatataaatt |
55417246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 306
Target Start/End: Complemental strand, 10116216 - 10116117
Alignment:
| Q |
207 |
cttggatttggagattgcaagttccggaaaaatataaatttctcatttggttagctagccacaatgcctcccctactttatctttgcttcatcataggaa |
306 |
Q |
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| T |
10116216 |
cttggatatggaggttgcaggttctggaaaaatataaatttctcgtatggtttacttgtcacaatgcttctcctaccttatctttgcttcatcataggaa |
10116117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 309
Target Start/End: Original strand, 35234785 - 35234887
Alignment:
| Q |
207 |
cttggatttggagattgcaagttccggaaaaatataaatttctcatttggttagctagccacaatgcctcccctactttatctttgcttcatcataggaa |
306 |
Q |
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||||||||||||| | |||| ||||||||||| || |||||||||||| ||||| | |||||||| ||| || ||||||||||| |||| ||||| |
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| T |
35234785 |
cttggatttggaggctcaaagtgccggaaaaatacaagtttctcatttggctagcttgtcacaatgctgtccccaccttatctttgctaaatcacaggaa |
35234884 |
T |
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| Q |
307 |
tat |
309 |
Q |
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||| |
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| T |
35234885 |
tat |
35234887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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