View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912_low_11 (Length: 247)
Name: NF8912_low_11
Description: NF8912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912_low_11 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 41448202 - 41447969
Alignment:
| Q |
14 |
cctgtgaccttgtaagccatcttgatgaagtcttttgatagcaataacaatgccagtgccaggtttggcagcagccaatgaattctcatcaatccaaccc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41448202 |
cctgtgaccttgtaagccatcttgatgaagtcttttgatagcaataacaatgctagtgccaggtttggcagcagccaatgaattctcatcaatccaaccc |
41448103 |
T |
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| Q |
114 |
ttaaaaactgatccaaaaccaccttctcctaacacattacgtggacgaaaatttccagtggctgtccagagttctgcataggtatagctctttaaattgg |
213 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41448102 |
ttaaaaactgatcaaaaatcaccttctcctaacacattacgtggacgaaaatttccggtggctgtccacagttctgcataggtatagctctttaaattgg |
41448003 |
T |
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| Q |
214 |
atgactgcaaaatctcaccctcagtttgagcggt |
247 |
Q |
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| T |
41448002 |
atgactgcaaaatctcaccctcagtttgagcggt |
41447969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 33 - 247
Target Start/End: Complemental strand, 41458557 - 41458343
Alignment:
| Q |
33 |
tcttgatgaagtcttttgatagcaataacaatgccagtgccaggtttggcagcagccaatgaattctcatcaatccaacccttaaaaactgatccaaaac |
132 |
Q |
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||||||| ||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41458557 |
tcttgattaaggcttttgatagcaataacaatgccaatgccaggtttggcagcagaaaatgaattctcatcaatccaacccttaaaaactgctccaaaac |
41458458 |
T |
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| Q |
133 |
caccttctcctaacacattacgtggacgaaaatttccagtggctgtccagagttctgcataggtatagctctttaaattggatgactgcaaaatctcacc |
232 |
Q |
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| T |
41458457 |
taccttctcctaacacattgtctggaaaaaaatttccagtggctgtcgagagttctgcataggtatagctctttaaagtggatgacggcaagatctcacc |
41458358 |
T |
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| Q |
233 |
ctcagtttgagcggt |
247 |
Q |
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|||| |||||||||| |
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| T |
41458357 |
ctcactttgagcggt |
41458343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 41441794 - 41441573
Alignment:
| Q |
14 |
cctgtgaccttgtaagccatcttgatgaagtcttttgatagcaataacaatgccagtgccaggtttggcagcagccaatgaattctcatcaatccaaccc |
113 |
Q |
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||||||||| || |||| ||||||| ||||||||| | ||||||||| |||||||| || |||||||||||| |||||| ||||||||| ||||||||| |
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| T |
41441794 |
cctgtgaccctggaagctttcttgattaagtcttttaacagcaataactatgccagtacccggtttggcagcaaccaatgtattctcatcgatccaaccc |
41441695 |
T |
|
| Q |
114 |
ttaaaaactgatccaaaaccaccttctcctaacacattacgtggacgaaaatttccagtggctgtccagagttctgcataggtatagctctttaaattgg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||| || || |||||||||| ||| || | | ||||| || ||||||||||||||||||| | |
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| T |
41441694 |
ttaaaaactgatccaaaaccaccttctcctaacacactatccggtcgaaaatttctagtagccgacttaagttcagctaaggtatagctctttaaatttg |
41441595 |
T |
|
| Q |
214 |
atgactgcaaaatctcaccctc |
235 |
Q |
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| T |
41441594 |
atgactgcaagatctcgccctc |
41441573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 149
Target Start/End: Complemental strand, 23828012 - 23827895
Alignment:
| Q |
32 |
atcttgatgaagtcttttgatagcaataacaatgccagtgccaggtttggcagcagccaatgaattctcatcaatccaacccttaaaaactgatccaaaa |
131 |
Q |
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|||||||||||||||||||| ||||| | ||||||| ||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
23828012 |
atcttgatgaagtcttttgacagcaacagcaatgcctgtgccaggttttgcagcagaagatgaatgttcatcaatccaacccttaaaaactgatccaaaa |
23827913 |
T |
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| Q |
132 |
ccaccttctcctaacaca |
149 |
Q |
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|||| |||||||||||| |
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| T |
23827912 |
tcaccatctcctaacaca |
23827895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 23818833 - 23818700
Alignment:
| Q |
16 |
tgtgaccttgtaagccatcttgatgaagtcttttgatagcaataacaatgccagtgccaggtttggcagcagccaatgaattctcatcaatccaaccctt |
115 |
Q |
| |
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||||||||| | |||||| || | ||||||||||| ||||| | |||||| ||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
23818833 |
tgtgacctttgaggccatcctggttaagtcttttgacagcaacagtaatgcctgtgccaggtttggcagcagaagatgaacgttcatcaatccaaccctt |
23818734 |
T |
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| Q |
116 |
aaaaactgatccaaaaccaccttctcctaacaca |
149 |
Q |
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|||||||||||||||| |||| |||||||||||| |
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| T |
23818733 |
aaaaactgatccaaaatcaccatctcctaacaca |
23818700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 23824089 - 23823970
Alignment:
| Q |
30 |
ccatcttgatgaagtcttttgatagcaataacaatgccagtgccaggtttggcagcagccaatgaattctcatcaatccaacccttaaaaactgatccaa |
129 |
Q |
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|||||||||| ||||||||||| ||||| ||||||| ||||||||||||||||||| | ||| | |||||||||| ||||||||||||||||||| |
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| T |
23824089 |
ccatcttgattaagtcttttgacagcaacggcaatgcctgtgccaggtttggcagcagaaagtgagtgttcatcaatccggcccttaaaaactgatccaa |
23823990 |
T |
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| Q |
130 |
aaccaccttctcctaacaca |
149 |
Q |
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|| | || |||||||||||| |
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| T |
23823989 |
aatcgccatctcctaacaca |
23823970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 23832017 - 23831912
Alignment:
| Q |
16 |
tgtgaccttgtaagccatcttgatgaagtcttttgatagcaataacaatgccagtgccaggtttggcagcagccaatgaattctcatcaatccaaccctt |
115 |
Q |
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||||||||| |||||||| |||| ||||||||||| |||| | ||||||| |||| ||||||||||||| |||| | ||||||||||||||||| |
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| T |
23832017 |
tgtgacctttgaagccatcctgataaagtcttttgacagcagcagcaatgcctttgccgggtttggcagcagaagatgagtgttcatcaatccaaccctt |
23831918 |
T |
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| Q |
116 |
aaaaac |
121 |
Q |
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||||| |
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| T |
23831917 |
gaaaac |
23831912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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