View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912_low_14 (Length: 237)

Name: NF8912_low_14
Description: NF8912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8912_low_14
NF8912_low_14
[»] chr1 (1 HSPs)
chr1 (1-219)||(52173757-52173975)
[»] chr7 (11 HSPs)
chr7 (1-183)||(31605230-31605412)
chr7 (1-164)||(31615098-31615261)
chr7 (1-164)||(31608824-31608987)
chr7 (1-162)||(31576564-31576725)
chr7 (1-181)||(31585974-31586153)
chr7 (1-181)||(31595621-31595801)
chr7 (10-161)||(31618843-31618994)
chr7 (1-88)||(33304746-33304833)
chr7 (2-99)||(31438583-31438680)
chr7 (1-81)||(31572428-31572508)
chr7 (1-60)||(31541583-31541642)
[»] chr4 (1 HSPs)
chr4 (2-81)||(15062948-15063027)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 52173975 - 52173757
Alignment:
Q  1 accatcaggtaaacttgctttgtatacaacaccatatcctccttggcctaatttatctcggaaagattttgtgatcctttttatttctctataactatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52173975 accatcaggtaaacttgctttgtatacaacaccatatcctccttggcctaatttatctcggaaagattttgtgatcctttttatttctctataactatat 52173876  T
Q  101 cttcttggcatagatgattcataactttgcatgaaaacctcgaaattgtggtcaacaagttttcgtttctttctgaaaatactttgttgtccagatgtac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52173875 cttcttggcatagatgattcataactttgcatgaaaacctcgacattgtggtcaacaagttttcgtttctttctgaaaatactttgttgtccagatgtac 52173776  T
Q  201 tccttttaaggtgacaaat 219  Q
    |||||||||||||||||||    
T  52173775 tccttttaaggtgacaaat 52173757  T

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Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 31605230 - 31605412
Alignment:
Q  1 accatcaggtaaacttgctttgtatacaacaccatatcctccttggcctaatttatctcggaaagattttgtgatcctttttatttctctataactatat 100  Q
    |||||||  ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| |||||||||||    
T  31605230 accatcaattaaacttgctttgtaaacaacaccatatcctccttggcctaatttaactcggaaagagtttgttatcctttttatttctttataactatat 31605329  T
Q  101 cttcttggcatagatgattcataactttgcatgaaaacctcgaaattgtggtcaacaagttttcgtttctttctgaaaatact 183  Q
    ||||||||||||||||| | |||||||||||||||||| || | |||||||||||||| ||||| | | || |||||||||||    
T  31605330 cttcttggcatagatgaattataactttgcatgaaaacttctacattgtggtcaacaacttttcttcttttcctgaaaatact 31605412  T

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Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 31615098 - 31615261
Alignment:
Q  1 accatcaggtaaacttgctttgtatacaacaccatatcctccttggcctaatttatctcggaaagattttgtgatcctttttatttctctataactatat 100  Q
    |||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| |||||||||||    
T  31615098 accatcaattaaacttgctttgtacacaacaccatatcctccttggcctaatttatctcggaaagagtttgttatcctttttacttctgtataactatat 31615197  T
Q  101 cttcttggcatagatgattcataactttgcatgaaaacctcgaaattgtggtcaacaagttttc 164  Q
    |||||||| |||||||| | |||| || ||||||||||||| | |||||||| ||||| |||||    
T  31615198 cttcttgggatagatgaattataatttcgcatgaaaacctctacattgtggttaacaacttttc 31615261  T

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Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 31608824 - 31608987
Alignment:
Q  1 accatcaggtaaacttgctttgtatacaacaccatatcctccttggcctaatttatctcggaaagattttgtgatcctttttatttctctataactatat 100  Q
    |||||| | ||||||||||||||| ||||||||||||||||| ||||||||||||||||| || || |||||||||||||||| |||| ||||||| |||    
T  31608824 accatccgttaaacttgctttgtacacaacaccatatcctccatggcctaatttatctcgaaatgagtttgtgatcctttttacttctgtataactgtat 31608923  T
Q  101 cttcttggcatagatgattcataactttgcatgaaaacctcgaaattgtggtcaacaagttttc 164  Q
    ||||| |  || ||| | |  |||||||||||||||||||||| ||||  ||||||| ||||||    
T  31608924 cttctcgcaatcgataaattgtaactttgcatgaaaacctcgacattgctgtcaacatgttttc 31608987  T

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Target: chr7; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 31576564 - 31576725
Alignment:
Q  1 accatcaggtaaacttgctttgtatacaacaccatatcctccttggcctaatttatctcggaaagattttgtgatcctttttatttctctataactatat 100  Q
    |||||||  ||||||||||||||| |||||||||||||||||||||||||||||||| || || || |||||||||||||||| |||| |||| |||||     
T  31576564 accatcaattaaacttgctttgtaaacaacaccatatcctccttggcctaatttatcccgaaatgagtttgtgatcctttttacttctgtatatctatac 31576663  T
Q  101 cttcttggcatagatgattcataactttgcatgaaaacctcgaaattgtggtcaacaagttt 162  Q
    ||||||||||| ||| | | |||||| |||||||| | ||| | ||||| ||| ||||||||    
T  31576664 cttcttggcatcgataaattataactctgcatgaatatctccacattgttgtccacaagttt 31576725  T

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Target: chr7; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 31585974 - 31586153
Alignment:
Q  1 accatcaggtaaacttgctttgtatacaacaccatatcctccttggcctaattta--tctcggaaagattttgtgatcctttttatttctctataactat 98  Q
    |||||||  ||||| ||||||||| |||||||||||||||||||| |||||||||  ||||| || || |||||||||||||||| |||| | |||||||    
T  31585974 accatcacttaaacatgctttgtacacaacaccatatcctccttgacctaatttatctctcgaaatgagtttgtgatcctttttacttctgtgtaactat 31586073  T
Q  99 atcttcttggcatagatgattcataactttgcatgaaaacctcgaaattgtggtcaacaagttttcgtttctttctgaaaata 181  Q
    |   ||||||||| ||| | | ||||||||||||||||||||| | |||||||||||| ||||||| | | ||||||||||||    
T  31586074 a---tcttggcattgataacttataactttgcatgaaaacctccacattgtggtcaaccagttttcttctttttctgaaaata 31586153  T

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Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 31595621 - 31595801
Alignment:
Q  1 accatcaggtaaacttgctttgtatacaacaccatatcctccttggcctaatttatctcggaaagattttgtgatcctttttatttctctataactatat 100  Q
    |||||| | ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||| ||||  |||||| |||    
T  31595621 accatccgttaaacttgctttgtacacaacaccatatcctccgtggcctaatttatcacggaatgagtttgtgatcctttttacttctgcataactgtat 31595720  T
Q  101 cttcttggcatagatgattcataactttgcatgaaaacctcgaaattgtggtcaacaagttttcgtttctttctgaaaata 181  Q
    ||||| |  |||||| | |  |||||||||||||||||||| | ||||| ||| ||| |||||| | | || |||||||||    
T  31595721 cttctcgcaatagataaattgtaactttgcatgaaaacctccacattgttgtcgacatgttttcttcttttcctgaaaata 31595801  T

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Target: chr7; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 31618843 - 31618994
Alignment:
Q  10 taaacttgctttgtatacaacaccatatcctccttggcctaatttatctcggaaagattttgtgatcctttttatttctctataactatatcttcttggc 109  Q
    ||||||||||||||| ||||||||||| |||||||||||||| || ||||| ||| | ||||||||| |||| | ||||  |||||||||||||||||||    
T  31618843 taaacttgctttgtagacaacaccataccctccttggcctaacttttctcgaaaatagtttgtgatcattttcacttctgcataactatatcttcttggc 31618942  T
Q  110 atagatgattcataactttgcatgaaaacctcgaaattgtggtcaacaagtt 161  Q
    || ||| | | || |||  ||||||||||||| | ||||| |||||||||||    
T  31618943 atggataaattatgactgcgcatgaaaacctccacattgttgtcaacaagtt 31618994  T

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Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 33304833 - 33304746
Alignment:
Q  1 accatcaggtaaacttgctttgtatacaacaccatatcctccttggcctaatttatctcggaaagattttgtgatcctttttatttct 88  Q
    |||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| || || ||||| || ||||||| ||||    
T  33304833 accatcaggtaagcttgctttgtacacaacaccatatcctccttgacctaatttatctcgaaatgagtttgtcattctttttacttct 33304746  T

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Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 31438680 - 31438583
Alignment:
Q  2 ccatcaggtaaacttgctttgtatacaacaccatatcctccttggcctaatttatctcggaaagattttgtgatcctttttatttctctataactata 99  Q
    ||||||||||||||||||||||| |||||||||||||||||||| || || |||||||| || || ||||||| |||||| | ||||  |||||||||    
T  31438680 ccatcaggtaaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcacttctgcataactata 31438583  T

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Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 31572508 - 31572428
Alignment:
Q  1 accatcaggtaaacttgctttgtatacaacaccatatcctccttggcctaatttatctcggaaagattttgtgatcctttt 81  Q
    |||||||||||||||||||||||| || ||||||||||||||||  |||||||||||||| || || ||||| || |||||    
T  31572508 accatcaggtaaacttgctttgtacacgacaccatatcctccttaacctaatttatctcgaaatgagtttgtcattctttt 31572428  T

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Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31541583 - 31541642
Alignment:
Q  1 accatcaggtaaacttgctttgtatacaacaccatatcctccttggcctaatttatctcg 60  Q
    ||||||||||||  |||||||||| |||||||||||||||||||| ||||||||||||||    
T  31541583 accatcaggtaagtttgctttgtaaacaacaccatatcctccttgacctaatttatctcg 31541642  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 15063027 - 15062948
Alignment:
Q  2 ccatcaggtaaacttgctttgtatacaacaccatatcctccttggcctaatttatctcggaaagattttgtgatcctttt 81  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||| || |||||||| || || ||||||| ||||||    
T  15063027 ccatcaggtaaactggctttgtaaacaacaccatatcctccttggcccaacttatctcgaaacgagtttgtgaacctttt 15062948  T

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