View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912_low_16 (Length: 217)
Name: NF8912_low_16
Description: NF8912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 41447719 - 41447900
Alignment:
| Q |
19 |
gctaatttgatttgtctaaagatattggctccaatagtaatagtactttcataacgtggtattcatgaggcttaatcttgaatcttttctccctaaagac |
118 |
Q |
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| T |
41447719 |
gctagtttgatttgtctaaagatattggctccaatagtaatagtactttcataatgtggtattcatgaggcttaaccttgaatcttttctctctaaagac |
41447818 |
T |
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| Q |
119 |
gccaaattcgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaatgtatgtttacttttcaagtgat |
200 |
Q |
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| T |
41447819 |
gccaaattcgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaatgtatgcttactttacaagtgat |
41447900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 41457939 - 41458027
Alignment:
| Q |
19 |
gctaatttgatttgtctaaagatattggctccaatagtaatagtactttcataacgtggtattcatgaggcttaatcttgaatcttttc |
107 |
Q |
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| T |
41457939 |
gctaatttgttttgtctaaagatattggctccaatagtaatagtactttcataacgtggtgttcatgaggcttaacgttgaatcttttc |
41458027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 41441247 - 41441411
Alignment:
| Q |
21 |
taatttgatttgtctaaagatattggctccaatagtaatagtactttcataacgtggtattcatgaggcttaatcttgaatcttttctccctaaagacgc |
120 |
Q |
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| T |
41441247 |
taatttgttttgtcaaaagatattgacttatatagtaatagtactttgatcaagtggtattgttgatgctcaaccttgaatattttctcaataaaggtgc |
41441346 |
T |
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| Q |
121 |
caaattcgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaatgtatgtt |
185 |
Q |
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| T |
41441347 |
caaatttgattcatttcattgtataaacacaattgaagatccggtttgatagctcaatgtatgtt |
41441411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 41458199 - 41458250
Alignment:
| Q |
127 |
cgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaat |
178 |
Q |
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| T |
41458199 |
cgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaat |
41458250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 95 - 200
Target Start/End: Complemental strand, 16418649 - 16418551
Alignment:
| Q |
95 |
cttgaatcttttctccctaaagacgccaaattcgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaatgtatgtttacttttca |
194 |
Q |
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| T |
16418649 |
cttgaatattttctccctcaagatgccaaattcgatgaa-------gtatgaacacacttgaagatctagtttgatagctcgatgtatgtttacttttca |
16418557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 16418710 - 16418666
Alignment:
| Q |
23 |
atttgatttgtctaaagatattggctccaatagtaatagtacttt |
67 |
Q |
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| T |
16418710 |
atttgttttgtctaaagatattggctcaaatagtaatagtaattt |
16418666 |
T |
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