View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912_low_4 (Length: 391)
Name: NF8912_low_4
Description: NF8912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 379
Target Start/End: Complemental strand, 28328503 - 28328140
Alignment:
| Q |
16 |
tcactgctaacaacgtgtaaaactaacttggcaacttgaatggataaaacatttattttgcaaatttgtataatacgccaactactctattgattgaaaa |
115 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28328503 |
tcactgctaagaacgtgtaaaactaacttagcaacttgaatggataaaacatttattttgcaaatttgtataatacgccaactactctattgattgaaaa |
28328404 |
T |
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| Q |
116 |
tccattttaagttactgacgaaaatactataacttaaatttccgcataatacgctatgatacaaatttgaccataaatatcatgnnnnnnngatgaaaaa |
215 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28328403 |
tccaatttaagttactgacgaaaatactataacttaaatttccgcataatacgctatgatacaaatttgaccataaatatcatgtttttttgatgaaaaa |
28328304 |
T |
|
| Q |
216 |
tttgaatgttctaaagtttacccagatgcacaaattaatgacaagcgagaaggtttaggagtcaaataattatgaatggtcattacagtgattgcgagtt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28328303 |
tttgaatgttctaaagtttacccagatgcacaaattaatgacaagcgagaaggtttaggagtcaaataattatgaatggtcattacagtgattgcgagtt |
28328204 |
T |
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| Q |
316 |
tgctatacatattgaatattttgcattaaaatgttaagcatcgatactcacacgtaaacaccaa |
379 |
Q |
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| T |
28328203 |
tgctatacatattgaatattttgcattaaaatgttaagcttcgatactcacacgtaaacaccaa |
28328140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 354
Target Start/End: Complemental strand, 28332567 - 28332232
Alignment:
| Q |
16 |
tcactgctaacaacgtgtaaaactaacttggcaacttgaatggataaaacatttattttgcaaatttgtataatacgccaactactctattgattgaaaa |
115 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28332567 |
tcactgctaggaacgtgtaaaactaacttagcaacttgaatggataaaacatatattttgcaaatttgtataaaacgccaactactctattgattgaaaa |
28332468 |
T |
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| Q |
116 |
tccattttaagttactgacgaaaatactataacttaaatttccgcataatacgctatgatacaaatttgaccataaatatcatgnnnnnnngatgaaaaa |
215 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||| |
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| T |
28332467 |
tccaatttaagttactgaggaaaatactataacttaaatttccgcatattacgccatgatacaaattttaccataaatatcatg---ttttgatgaaaaa |
28332371 |
T |
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| Q |
216 |
tttgaatgttctaaagtttacccagatgcacaaattaatgacaagcgagaaggtttaggagtcaaataattatgaatggtcattacagtgattgcgagtt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
28332370 |
tttgaatgttctaaagtttacccagatgcacaaattaatgacaagtgagaaggtttaggagtcaaataattatgaatggtaattacagtgatagcgagtt |
28332271 |
T |
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| Q |
316 |
tgctatacatattgaatattttgcattaaaatgttaagc |
354 |
Q |
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| T |
28332270 |
tcctatgcatactgaatattttgcattaaaatgttaagc |
28332232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 21160110 - 21160189
Alignment:
| Q |
103 |
tattgattgaaaatccattttaagttactgacgaaaatactataacttaaatttccgcataatacgctatgatacaaattt |
183 |
Q |
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|||||||||||| |||| ||| ||||||||| ||||||| || | | |||||||| |||||||||| |||||||||||||| |
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| T |
21160110 |
tattgattgaaagtccactttgagttactgaggaaaata-taaaccataaatttcagcataatacgttatgatacaaattt |
21160189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 326
Target Start/End: Original strand, 21157833 - 21157894
Alignment:
| Q |
265 |
aaggtttaggagtcaaataattatgaatggtcattacagtgattgcgagtttgctatacata |
326 |
Q |
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||||||||||||||||||||||||||| | |||| |||||||||| | |||| |||| |||| |
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| T |
21157833 |
aaggtttaggagtcaaataattatgaaagctcataacagtgattgagggtttcctatccata |
21157894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 326
Target Start/End: Complemental strand, 1638915 - 1638855
Alignment:
| Q |
265 |
aaggtttaggagtcaaataattatgaatggtcattacagtgattgcgagtttgctatacata |
326 |
Q |
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||||||||| ||||||||||||||||| | |||| |||||||||| | ||||||||| |||| |
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| T |
1638915 |
aaggtttag-agtcaaataattatgaaagctcataacagtgattgagggtttgctatccata |
1638855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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