View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912_low_5 (Length: 345)
Name: NF8912_low_5
Description: NF8912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 43582626 - 43582512
Alignment:
| Q |
216 |
agatcattagctagggaaagtcagcaaagaattcttaaatagtttcaacattcaaacatgaaagtttttgcaaattgttgatctgaatttgtctttaagt |
315 |
Q |
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| T |
43582626 |
agatcattagctagggaaagtcagcaaagaattcttaaatagtttcaacattcaaacatgaaagtttttgcaaattgttgatctgaatttgtctttaagt |
43582527 |
T |
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| Q |
316 |
ttaagaggttgtttt |
330 |
Q |
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| T |
43582526 |
ttaagaggttgtttt |
43582512 |
T |
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Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 43582857 - 43582763
Alignment:
| Q |
31 |
tggtcagggttcgaacctcattattatttttatttatttgtatattaattgtccggaaggtttgagattgacggttaaagtttgacctattaagt |
125 |
Q |
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| T |
43582857 |
tggtcagggttcgaacctcatttctattcttatttatttgtatcttaattgtccggaaggtttgagattgacagttaaagtttgacctattaagt |
43582763 |
T |
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