View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912_low_6 (Length: 332)
Name: NF8912_low_6
Description: NF8912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 13212222 - 13212542
Alignment:
| Q |
1 |
acaactttaataatcgtcggtagtaagtacaaacctaccattaatgcagtggattagaccacaatttggaaagtgaaaatctttgaaaccatgatgatgc |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13212222 |
acaactttaataatcgtcagtagtaagtacaaacctaccattaatgcagtggattagaccacaatttggaaagtgaaaatctttgaaaccatgatgatgt |
13212321 |
T |
|
| Q |
101 |
aat-----ttacaaggtagaattaacaccctgatacactcgattgagttaaaacatctgtaaatgcaagtataattttagttataggaactt-aatttta |
194 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13212322 |
aattgtgattacaaggtagaattaacaccctgatacactcgattgagttaaaacatctgtaaatgcaagtataattttagttataggaacttaaatttta |
13212421 |
T |
|
| Q |
195 |
aacactgcataactaattagtgcttcacctttc-aaattgtatttgttatagggttattaattattgtacgtaattttatactctactatgtgttctgta |
293 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
13212422 |
aacactgcataactaattagtgcttcacctttcaaaattgtatttgttatagggttattatttattgtacgtaattttatactctac--tgtgttctgta |
13212519 |
T |
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| Q |
294 |
atgaaattttcagctcaatgaac |
316 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
13212520 |
atgaaattttcagctcaatgaac |
13212542 |
T |
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